Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0451 ATGTACAGAGAACGAGGTGGTGTTGGGTCCAAGTCCGAGGTGGGTTCGGTTGGTCGCAAGAGAACCAATGAAGTCCTCGACAAGCAGCTCGAACGATATCCGCCGTCCACTTCCAGGGGAATCAAGGCGAAGGACAGTTCGGCGGAATCCATCTTGGCTGCTAAACTACCCTGTGATCACATGGACTCTTACTCTGCCTCCGATGGGGTATCTGAAACAGACGATGACGGATCAGATGGTTATGGTTATGATGGGGATGACAAGTCTTGGACCTTTAAGTTTTGTACTATAAGAGGAAACGAATTCTTTTGTGAAGTTGATCATAATTACATGCAAGATGATTTCAACCTCTATGGATTAAGCAGTCAAGTCCCTTACTATGACTATGCCCTTGATTTAATTCTGGATGTTGAATCCTCTCATGATGACATGTTCACAGAGGAGCAAAATGAATTAATTGAATCAAATGCAAAGATGCTTTATGGTCTGATACATGCTCGATATGTTTTGACAAATAAAGGAATGGATGCTATGTTGCACAAGTATAAAAAGTATCACTTTGGCAGGTGTCCAAGAGCTTACTGCTCTAGACAATCCTGCCTTCCCATTGGTCAGTCAGACATTCCTATGTCAAGTACTGTGAAGATATACTGCCCCAGCTGTAAAGACATCTACTACCCCCGACACCAGAACCAAGGCGGAGATATGTTCCAAGAGTTTTTGGTTTCAAAGTTCACAAGCATTCAACATAAGAAGAGTCTGTACGTGTCAAACTTAACTCACTCTGCCGTGTCCCAATTGAGCCTGTACGCAAGCTGGATTGCATCTTTATTTCATATTCTCGGGGGTCTTCATCGCGATTTGTTGTTATGCGATGACATCGCTGACGTTTTGTTGAAATTGTGTCAAGGCAAGGAGGAATTGGTGGAAGGAGGCATGTACAGAGAGAGAGCAAGGGCTGGGTCCAAATCGGAGGTTAGTTCCGTTGATCGAAAGCGAATCAACGACGTTCTCGACAAGCAGCTTGAGCGATCCTCGCCGTCCACTTCTAGGGCTATCAACGGCAAGGATAGGTCGGTGCAATCTGTATTGACGGGCAAGCCACTGGCCCATCACCATGATTCTCGCTCTGCCTCCATATCTAAGAACTCTAACATTTCAGATGTTGCAGAGGAATCTGAAACAGACAGTGAGGAGTCATATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATTTCATGGTTCTGCAATCTAAGAGGAAATGAATTCTTTTGCGAGGTTGATGATGATTACATCCAAGACGATTTCAACCTCTGTGGATTAAGTAGTCAAGTTCCTTACTATGATTATGCACTAGATTTAATTTTGGATGTTGAATCCTCCCATGGTGACATGTTAACAGAGGAACAAAATGAGTTAATTGAATCAGCAGCAGAAATGCTTTATGGTCTTATTCATGCCCGGTACATATTGACTGGCAGAGGAATGGCTGCTATGCTGGACAAGTACAAGAACTATGATTTTGGGAGATGCCCGAGAGTTTACTGCTCTGGACAACCCTGTCTTCCAGTTGGTCAGTCGGACATTCCTAGGTCAACTGAAGCCACAAAAGCCCTTGCAGAGCTATGTGCCAAGGGTCTTCGGCTTCAAAATTCATAA 1662 0.4422 MYRERGGVGSKSEVGSVGRKRTNEVLDKQLERYPPSTSRGIKAKDSSAESILAAKLPCDHMDSYSASDGVSETDDDGSDGYGYDGDDKSWTFKFCTIRGNEFFCEVDHNYMQDDFNLYGLSSQVPYYDYALDLILDVESSHDDMFTEEQNELIESNAKMLYGLIHARYVLTNKGMDAMLHKYKKYHFGRCPRAYCSRQSCLPIGQSDIPMSSTVKIYCPSCKDIYYPRHQNQGGDMFQEFLVSKFTSIQHKKSLYVSNLTHSAVSQLSLYASWIASLFHILGGLHRDLLLCDDIADVLLKLCQGKEELVEGGMYRERARAGSKSEVSSVDRKRINDVLDKQLERSSPSTSRAINGKDRSVQSVLTGKPLAHHHDSRSASISKNSNISDVAEESETDSEESYVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMLTEEQNELIESAAEMLYGLIHARYILTGRGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSTEATKALAELCAKGLRLQNS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0451 553 Gene3D - 509 546 - -
Lele49g0451 553 Gene3D - 187 252 - -
Lele49g0451 553 Pfam Casein kinase II regulatory subunit 89 248 IPR000704 GO:0005956|GO:0019887
Lele49g0451 553 Pfam Casein kinase II regulatory subunit 411 535 IPR000704 GO:0005956|GO:0019887
Lele49g0451 553 MobiDBLite consensus disorder prediction 369 407 - -
Lele49g0451 553 MobiDBLite consensus disorder prediction 1 47 - -
Lele49g0451 553 ProSitePatterns Casein kinase II regulatory subunit signature. 190 221 IPR000704 GO:0005956|GO:0019887
Lele49g0451 553 PRINTS Casein kinase II regulatory subunit family signature 89 105 IPR000704 GO:0005956|GO:0019887
Lele49g0451 553 PRINTS Casein kinase II regulatory subunit family signature 161 182 IPR000704 GO:0005956|GO:0019887
Lele49g0451 553 PRINTS Casein kinase II regulatory subunit family signature 106 120 IPR000704 GO:0005956|GO:0019887
Lele49g0451 553 PRINTS Casein kinase II regulatory subunit family signature 186 207 IPR000704 GO:0005956|GO:0019887
Lele49g0451 553 PRINTS Casein kinase II regulatory subunit family signature 208 229 IPR000704 GO:0005956|GO:0019887
Lele49g0451 553 FunFam Casein kinase II subunit beta 83 186 - -
Lele49g0451 553 SUPERFAMILY Casein kinase II beta subunit 409 533 IPR035991 GO:0005956|GO:0019887
Lele49g0451 553 PANTHER CASEIN KINASE II SUBUNIT BETA 390 535 IPR000704 GO:0005956|GO:0019887
Lele49g0451 553 FunFam Casein kinase II subunit beta 404 508 - -
Lele49g0451 553 SUPERFAMILY Casein kinase II beta subunit 87 244 IPR035991 GO:0005956|GO:0019887
Lele49g0451 553 FunFam Casein kinase II subunit beta 187 253 - -
Lele49g0451 553 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 404 508 IPR016149 GO:0005956|GO:0019887
Lele49g0451 553 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 83 186 IPR016149 GO:0005956|GO:0019887
Lele49g0451 553 SMART CK_II_beta_2 89 246 IPR000704 GO:0005956|GO:0019887
Lele49g0451 553 SMART CK_II_beta_2 411 549 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0451 Lele-ChrLele49 2703182 2708721 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0451 49 2703182 2708721 Lele53g0294 53 2470140 2472745 CCT
Lele49g0451 49 2703182 2708721 Lele54g0293 54 2489242 2491692 CCT
Lele49g0451 49 2703182 2708721 Lele55g1194 55 18548899 18551814 CCT
Lele49g0451 49 2703182 2708721 Lele56g1146 56 14918678 14921170 CCT
Lele49g0451 49 2703182 2708721 Lele49g0451 49 2703182 2708721 ECH
Lele49g0451 49 2703182 2708721 Lele51g0468 51 2756513 2759805 hybridization
Lele49g0451 49 2703182 2708721 Lele52g0486 52 2954731 2957455 hybridization