Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0488 ATGGATTTCTCAGAGCAGGACCTAGATATATTCGGCGAACATTACGATCAGGACCCCGACAAAGCCCGTGACGACCAAGACGGGACTCACTCCTCTTCCCCATCTTCATCCTCCTCTGGCTCTTCTTCTTCATCCTCTTCATCATCTGCTTCTTCATCCAACGCCAGTGATGGCGATGATTCCTCCAGCGGTAGCGGAAGCTCCAGTAGTGCTGCCGATGAAGACGAAGAGAATGGCGAGGAGGTTGAGCATAGCAGTAGGGCGTATTATGACGTTGACGAAAAAGACCTGTTTGGTTCTGATAATGAAGATTATTGTAAAACTCCTGCTCAAAGTCCTTACTCGATTCCAGTATTGCCCGCCGTCCGCAATACAAATAATCAGGGTAGGGGGGGGTTTGGCCGTGGTCGTTGGCAAAATGATAGAGGAGCAGGCCTTCTTCCTCGTCCTGGACCTTATCCTCAGAGGCAAAATTTTGGTTATGGAAACAGGTTTTCAAACGGCCGCCATGATGAAAGATTTGTAGCTGAGCTGAAGCTTTCCAAGAGTGAAGAGACTTTGTCAAGAAAGTGTATTGCTATTCAGGAGCCATGTGAAATTGCCTGCTATAGTCGTGTAGAAGGTGGAGAGGTCTACTTTGATGATCGCAGCTTGAGGCTTTTTAAACGCCTTATCACTGAAGATATTGGAGCTGATTTGAATGAGGGCTATGATACATTTATTGCTAAAAAAGACTTAGGCTCAGAGGGCTTTGGTGATCTTCTTGCTTGCATTAGAGACAAAAATATTCCCCTCCAAAACATTCATTTTGTGACATTTCGTAACAATCTTAACAAGATAATGGCCACTGCTTATATCCGACATGAGCCTTGGGAAATGGGGGTGCATAAAAGGAATGGGGTTGTTTATCTTGATGTGCATAAACTGCCAGAAAGACCACAGAGTGATTTGGATCGCCGGAGATGTTATTGGGGATATTGTTTTGAGAGCCTTGCCACTGAAGATCCTAGGTCTGATGGAGAGGGGATACATCATATTGATGCCAATGTTGAATATTGTTCTGTGATCAAAACAAAATTAGGAGCTCACCGCATCTTGATGGGTGCTGAGATGGATTGCTGTGATTCAACTGATGATGGAAGGAGATTTTATGTTGAACTAAAGACAAGTCGTGAGTTGGACTATCATACTGAGGAAAAATATGAGAGAGAAAAACTGCTAAAGTTTTGGATTCAGTCATTTTTGGCGGGAGTTCCATACATTGTCATAGGATTTAGAGATGATGCTGGTCATCTTGTTCGGACGGAGAGACTAAGAACCAAAGAAATCACTCAGAGAATAAAAATGAAGAACTACTGGCAGGGAGGAGTCTGCTTGGCGTTTGCAGATGAAGTTTTATGCTGGCTTTATGGAACAGTCAAGGAGAATGAAGATTACGTATTGCAGTTCGCTCCACCTTTCACCCGTTTGGAGCTTCTACAGGGCCAGTCTTGTCCAGATGCAATTACCAGTCATCTTGAGCTGTTGTGA 1530 0.4418 MDFSEQDLDIFGEHYDQDPDKARDDQDGTHSSSPSSSSSGSSSSSSSSSASSSNASDGDDSSSGSGSSSSAADEDEENGEEVEHSSRAYYDVDEKDLFGSDNEDYCKTPAQSPYSIPVLPAVRNTNNQGRGGFGRGRWQNDRGAGLLPRPGPYPQRQNFGYGNRFSNGRHDERFVAELKLSKSEETLSRKCIAIQEPCEIACYSRVEGGEVYFDDRSLRLFKRLITEDIGADLNEGYDTFIAKKDLGSEGFGDLLACIRDKNIPLQNIHFVTFRNNLNKIMATAYIRHEPWEMGVHKRNGVVYLDVHKLPERPQSDLDRRRCYWGYCFESLATEDPRSDGEGIHHIDANVEYCSVIKTKLGAHRILMGAEMDCCDSTDDGRRFYVELKTSRELDYHTEEKYEREKLLKFWIQSFLAGVPYIVIGFRDDAGHLVRTERLRTKEITQRIKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYVLQFAPPFTRLELLQGQSCPDAITSHLELL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0488 509 MobiDBLite consensus disorder prediction 1 91 - -
Lele52g0488 509 MobiDBLite consensus disorder prediction 7 28 - -
Lele52g0488 509 MobiDBLite consensus disorder prediction 29 72 - -
Lele52g0488 509 PANTHER DOM-3 RELATED 27 497 IPR039039 -
Lele52g0488 509 Pfam RAI1 like PD-(D/E)XK nuclease 371 433 IPR013961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0488 Lele-ChrLele52 2964770 2969230 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0488 52 2964770 2969230 Lele53g0294 53 2470140 2472745 CCT
Lele52g0488 52 2964770 2969230 Lele54g0293 54 2489242 2491692 CCT
Lele52g0488 52 2964770 2969230 Lele55g1194 55 18548899 18551814 CCT
Lele52g0488 52 2964770 2969230 Lele56g1146 56 14918678 14921170 CCT
Lele52g0488 52 2964770 2969230 Lele52g0488 52 2964770 2969230 ECH
Lele49g0453 49 2714272 2718567 Lele52g0488 52 2964770 2969230 hybridization
Lele50g0490 50 2892827 2897298 Lele52g0488 52 2964770 2969230 hybridization