Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0293 ATGTACAGAGAACGAGGAGCAGTTGGATCGAAATCGGAAGTGGGTTCCGTTGATCGGAAGCGAATCAATGACGTCCTGGACAAGCAGCTTGAGCGATCATCGCCGTCGACATCTAGGACCATCAACGGCAAGGATAGGTCGGCACAATTCGTGCTAGCCGGCAAGCCACCCCATGATCACAGGGACCCACGTTCTGCTCCCGTCTCCAAGAACACCAACGCTTCACATGAGGAATCTGAAACAGACAGTGAAGAGTCAGATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATTTCATGGTTCTGCAATCTGAGAGGAAATGAATTCTTTTGTGAGGTTGATGATGATTACATCCAAGATGATTTCAACCTCTGCGGATTAAGCAGTCAAGTACCTTACTATGATTATGCACTTGATTTAATTCTGGATGTTGAATCCTCCCATGGTGACATGTTCACAGAGGAACAAAATGAATTAATTGAATCAGCAGCAGAGATGCTATATGGTCTGATTCATGCCCGATACGTCCTGACAAGCAAAGGAATGGCTGCTATGCTGGAAAAGTACAAGAACTATGATTTTGGTAGATGCCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCCAGGTCAAGTACTGTGAAAATCTACTGCCCTCGGTGTGAAGATATTTACTATCCCCGGTCTAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGGACTACGTTTCCTCATCTCTTCCTGATGACATACGAACAACTGAAGCCACAGAAACCATCACAGAGCTACGTTCCAAGAGTTTTTGGTTTCAAACTTCACAAGCCATGA 855 0.4526 MYRERGAVGSKSEVGSVDRKRINDVLDKQLERSSPSTSRTINGKDRSAQFVLAGKPPHDHRDPRSAPVSKNTNASHEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLEKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYEQLKPQKPSQSYVPRVFGFKLHKP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0293 284 PRINTS Casein kinase II regulatory subunit family signature 114 128 IPR000704 GO:0005956|GO:0019887
Lele54g0293 284 PRINTS Casein kinase II regulatory subunit family signature 244 261 IPR000704 GO:0005956|GO:0019887
Lele54g0293 284 PRINTS Casein kinase II regulatory subunit family signature 194 215 IPR000704 GO:0005956|GO:0019887
Lele54g0293 284 PRINTS Casein kinase II regulatory subunit family signature 169 190 IPR000704 GO:0005956|GO:0019887
Lele54g0293 284 PRINTS Casein kinase II regulatory subunit family signature 97 113 IPR000704 GO:0005956|GO:0019887
Lele54g0293 284 PRINTS Casein kinase II regulatory subunit family signature 216 237 IPR000704 GO:0005956|GO:0019887
Lele54g0293 284 Pfam Casein kinase II regulatory subunit 97 280 IPR000704 GO:0005956|GO:0019887
Lele54g0293 284 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 90 194 IPR016149 GO:0005956|GO:0019887
Lele54g0293 284 Gene3D - 195 269 - -
Lele54g0293 284 FunFam Casein kinase II subunit beta 195 269 - -
Lele54g0293 284 MobiDBLite consensus disorder prediction 1 93 - -
Lele54g0293 284 FunFam Casein kinase II subunit beta 90 194 - -
Lele54g0293 284 PANTHER CASEIN KINASE II SUBUNIT BETA 76 283 IPR000704 GO:0005956|GO:0019887
Lele54g0293 284 SMART CK_II_beta_2 97 280 IPR000704 GO:0005956|GO:0019887
Lele54g0293 284 MobiDBLite consensus disorder prediction 29 45 - -
Lele54g0293 284 ProSitePatterns Casein kinase II regulatory subunit signature. 198 229 IPR000704 GO:0005956|GO:0019887
Lele54g0293 284 MobiDBLite consensus disorder prediction 14 28 - -
Lele54g0293 284 SUPERFAMILY Casein kinase II beta subunit 95 283 IPR035991 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0293 Lele-ChrLele54 2489242 2491692 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0490 50 2892827 2897298 Lele54g0293 54 2489242 2491692 CCT
Lele52g0488 52 2964770 2969230 Lele54g0293 54 2489242 2491692 CCT
Lele49g0451 49 2703182 2708721 Lele54g0293 54 2489242 2491692 CCT
Lele54g0293 54 2489242 2491692 Lele55g1194 55 18548899 18551814 hybridization
Lele54g0293 54 2489242 2491692 Lele56g1146 56 14918678 14921170 hybridization