Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0041 ATGAGCAAAGCCCCGTCAGCGTGCTCTGCAAATTACGTGCCTTTGACGCCTATCATTTTCTTGGAACGGGCCGCCACCGTGCACGCCGATAAGCCGTCCATCGTCTACGGTGATGTCAGATTTTCATGGAAGGAAACCCACGGAAGATGCCTCAGGCTCGCTTCTGCTTTGCTCAACCTGGGTATTTCTCACCCTGATATTGTTGCGGCTTTGGCACCAAATATTCCAGAGCTCTATGAGCTGCATTTCGCTATTCCAATGGCTGGGGCAGTTATTTCTGCACTCAACACCAAACTGGACGCCACCACATTGTCTGTGATATTGGAACAGCTAGAAGCTAAAATTATGTTTGTGGACTATCAGTTCGTTGAAGTTGTCCTTAAATCATTCAATATAATGTCTCAAACAAAATGCAAGCCTCCCCTGCTTGTTGTTATCCCAGATTATAACAAACAACCATCTCTCATTCTTAAGAATCTGCCGCCAGGCACCCTGAACTTCAACCAACTGCTTGAGAAGGGACCAGCATATTTTGAGATTAGAATGCCGACCAATGAATGCAATCCTATATCAGTGAATTATACGTCAGGCTCCACGGGAACTCCTAAAGGAGCCATTTACAGTCACAGAGGAGCCTATCTTAATTCATTGGCCGCAATCTCGCGGTTCAATGTGAAACCAATGCCCGTGTTTCTGTGGACAGTGGACATGTTTCGTTGCAACGGGTGGTGCTTTACTTGGGCAATGGCTACTCTGGGTGGCACCAATATTTGTCTTAGAAATGTCTCAGCCAAAGCCATGTTCGATGCAATCTCCCTTCACAACGTGACCCATCTGTGCGGTCCACCCGCACTTTTGAACGTAATTGCAGACGCACCACAAAGTGAACAGAAGCCTCTGCCTCTGGGTGTGAGCATCACAGTTGCTGGGGTGCTTCCACCGTCCCAAGTTTTCTGCAAGGTGGCAGAACTTGGGTTCGGTGTGAACGTTGGATATGGCATGACAGAAGCAATGGGTCCTGTGCTCGTGCGACCTTGGAAACCCAATTCAGGTGATGAAGAACTCACTGAAAAAATCAGTTATGGAGATGAAGGGTTTCCCATATTAATGATGGAAGGGATTGATGTGAAAGATCCAAACACAATGGAGAGTACTCCTTGTGATGGGAAAACCATTGGTGAGATTATGTTTAAAGGCAACACCATGATGCTAGGGTACCTTAAGAATCGACAATTAACCAAGGAAGCTTTCAGAGAGGGATGGTACAGAACAGGGGATCTTGCAACGAAGCAAAAGGATGGTTCCATAAGACTAAAGGACAGAGCAAAAGATTTGATATATTCAAAAGGGGAGGCTGTGAGCTCACTCGAGGTGGAGGCTGTGTTACTGAGCCACCCCAAGGTTCTGAATGCTGCCGTTGTGGGAAGATATGATGAACATATGGTGGAGTCGCCCTTTGCAATTGTCAAATTGAAAGAAGGATGTGGGGCCACCGTGGAAGATATTATCAGGTTTTGTAAAGCTAGGTTGGATACTCACATGGTTCCTCAGAGTGTGGTTTTCGGAGATTTGCCTGTTAATTCTACCGGCAAGGTTCAAAAATTTCTCATCAGAGAGAAGATCAAATGCGGTGGATGA 1638 0.4634 MSKAPSACSANYVPLTPIIFLERAATVHADKPSIVYGDVRFSWKETHGRCLRLASALLNLGISHPDIVAALAPNIPELYELHFAIPMAGAVISALNTKLDATTLSVILEQLEAKIMFVDYQFVEVVLKSFNIMSQTKCKPPLLVVIPDYNKQPSLILKNLPPGTLNFNQLLEKGPAYFEIRMPTNECNPISVNYTSGSTGTPKGAIYSHRGAYLNSLAAISRFNVKPMPVFLWTVDMFRCNGWCFTWAMATLGGTNICLRNVSAKAMFDAISLHNVTHLCGPPALLNVIADAPQSEQKPLPLGVSITVAGVLPPSQVFCKVAELGFGVNVGYGMTEAMGPVLVRPWKPNSGDEELTEKISYGDEGFPILMMEGIDVKDPNTMESTPCDGKTIGEIMFKGNTMMLGYLKNRQLTKEAFREGWYRTGDLATKQKDGSIRLKDRAKDLIYSKGEAVSSLEVEAVLLSHPKVLNAAVVGRYDEHMVESPFAIVKLKEGCGATVEDIIRFCKARLDTHMVPQSVVFGDLPVNSTGKVQKFLIREKIKCGG 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0041 545 Pfam AMP-binding enzyme 21 447 IPR000873 -
Lele52g0041 545 PANTHER ACYL-ACTIVATING ENZYME 3 542 - -
Lele52g0041 545 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Lele52g0041 545 Gene3D - 443 543 IPR045851 -
Lele52g0041 545 CDD ttLC_FACS_AEE21_like 12 539 - -
Lele52g0041 545 Pfam AMP-binding enzyme C-terminal domain 457 531 IPR025110 -
Lele52g0041 545 Gene3D - 5 442 IPR042099 -
Lele52g0041 545 SUPERFAMILY Acetyl-CoA synthetase-like 14 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0041 Lele-ChrLele52 273520 277152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0041 78 542 Miscellaneous Gene Families AT1G20560 49.251 6.48e-160 462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele56g0218 56 1776795 1777670 Lele52g0041 52 273520 277152 CCT
Lele49g0035 49 239300 244842 Lele52g0041 52 273520 277152 hybridization
Lele50g0040 50 280483 284135 Lele52g0041 52 273520 277152 hybridization