Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0486 ATGTACAGAGAGCGAGGTGGTGTTGGGTCCAAGTCCGAGGTGGCTTCGGTTGATCGCAAGCGAATCAATGACGTCCTCGACAAGCAGCTCGAGCGATCATTGCCGTCCACTTCCAGGGCAATCAAGGCGAAGGACAGTTCGGCGCAATCCATCTTGGCTGCTAAACTACCCTATGATCACAGGGACTCTCACTCTGCCTCTGTCTTCAAGAATTCCGATGCCTCTGATGAGGAATCTGAAACAGACACTGAGGCATCAGATGTTAGTGATTCTGATGGGGATGACGTGTCTTGGATCTCATGGTTTTGCAATCTAAGAGGAAACGAATTCTTTAGTGAAGTTGATGCTGATTACATACAAGATGATTTCAACCTCTGTGGATTAAGCAGTCAAGTTCCTTACTATGATTATGCCCTTGATTTAATTTTGGATGTTGAATCCTCTCATGGTGACATGTTCACAGAGGAACAAAATGAATTAATTGAATCAGCTGCAGAGATGCTTTATGGTCTGATACATGCGCGATATGTTTTGACAAATAAAGGAATGGATGCTATGATGCACAAGTATAAAAACTATGACTTTGGCAGGTGTCCAAGAGTTTACTGCTCTCGACAAACCTGCCTTCCGGTTGGTCAGTCAGACATTCCTAGGTCAAGTACTGTCAAGATATACTGCCCTAGCTGTGAGGACATCTACGACCCCCGGTCCAAGTATCAAGGCAGCGAAAGCCGAAACACAGGGAAGAGAAAGGATAGAAATGGCCTAGCTTCTCCTGGAACCTGA 786 0.4555 MYRERGGVGSKSEVASVDRKRINDVLDKQLERSLPSTSRAIKAKDSSAQSILAAKLPYDHRDSHSASVFKNSDASDEESETDTEASDVSDSDGDDVSWISWFCNLRGNEFFSEVDADYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTNKGMDAMMHKYKNYDFGRCPRVYCSRQTCLPVGQSDIPRSSTVKIYCPSCEDIYDPRSKYQGSESRNTGKRKDRNGLASPGT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0486 261 Pfam Casein kinase II regulatory subunit 97 240 IPR000704 GO:0005956|GO:0019887
Lele52g0486 261 SMART CK_II_beta_2 97 257 IPR000704 GO:0005956|GO:0019887
Lele52g0486 261 FunFam Casein kinase II subunit beta 195 245 - -
Lele52g0486 261 MobiDBLite consensus disorder prediction 77 91 - -
Lele52g0486 261 FunFam Casein kinase II subunit beta 90 194 - -
Lele52g0486 261 Gene3D - 195 246 - -
Lele52g0486 261 MobiDBLite consensus disorder prediction 235 261 - -
Lele52g0486 261 MobiDBLite consensus disorder prediction 59 93 - -
Lele52g0486 261 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 90 194 IPR016149 GO:0005956|GO:0019887
Lele52g0486 261 SUPERFAMILY Casein kinase II beta subunit 95 239 IPR035991 GO:0005956|GO:0019887
Lele52g0486 261 MobiDBLite consensus disorder prediction 59 76 - -
Lele52g0486 261 ProSitePatterns Casein kinase II regulatory subunit signature. 198 229 IPR000704 GO:0005956|GO:0019887
Lele52g0486 261 PRINTS Casein kinase II regulatory subunit family signature 114 128 IPR000704 GO:0005956|GO:0019887
Lele52g0486 261 PRINTS Casein kinase II regulatory subunit family signature 216 237 IPR000704 GO:0005956|GO:0019887
Lele52g0486 261 PRINTS Casein kinase II regulatory subunit family signature 97 113 IPR000704 GO:0005956|GO:0019887
Lele52g0486 261 PRINTS Casein kinase II regulatory subunit family signature 194 215 IPR000704 GO:0005956|GO:0019887
Lele52g0486 261 PRINTS Casein kinase II regulatory subunit family signature 169 190 IPR000704 GO:0005956|GO:0019887
Lele52g0486 261 PANTHER CASEIN KINASE II SUBUNIT BETA 76 241 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0486 Lele-ChrLele52 2954731 2957455 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0486 52 2954731 2957455 Lele52g0486 52 2954731 2957455 ECH
Lele49g0451 49 2703182 2708721 Lele52g0486 52 2954731 2957455 hybridization
Lele50g0488 50 2885666 2888002 Lele52g0486 52 2954731 2957455 hybridization