Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0442 ATGGCCGTTCAAGCTCAATACCCATCCAATATTCTCCTCCTCAACAGAAATGAACAGGAAGGGCATGATTATTCGTTACAGCCACAACCAGGAGGGCTTCTTGATCAGTCCCATGTCTTATTCAACAATGGAGGTACTAATTCTCGCAAGAGAGGAAGAGAAGCAACGGCGGCCACCTGCGTCGCCCAAACATCTCCTAACGGTGTTGATCCTTTCTCTTTGCAATCCCAGCCTCTTCGGCTCGTAGAACTCTCTCAACTCCATAACCAACAACCAAATGTGGTCTCCACAGGCCTCCGATTATCCTTCGGAGACCATCAACAGCAACGACAACAAAGACTACAATCACAGCAACAACATCAACAAGCCTGTCAGCCGTATGCTTTCTTATCTCTATTACCGGAAGGATTTGCCTCCCAAATCAAACAACAGCGTGATGAGATCGATCAATTTCTTCAGGCCCAGGGAGAACAATTGCGACGAGCACTAGCCGAGAAGAGGCAGAGGCATTATCGTGAACTTCTAAGCGCGGCGGAAGAATCGGTGGCCCGGCGGTTGAGAGAGAAGGAGGTTGAGATGGAGAAGGCAACGCGCAGGAATGCCGAGTTAGAAGCGCGGGCGGCGCAACTTAGCGTGGAGGCGCAGGTTTGGCAGGCAAAGGCAAAGGCACAAGAGGCAACGGCGACGTCCCTGCAAGCGCAACTGCAACTGCAACAGGCTATGATGAGCGGGGGTGCGCAGGATAAAGGGGGAGGGTGTTTCGCGGAGGACGGAGGGCTATCATGCGCGGTGGGTTGCGGAGAGGGCCAACCGGAGGACGCCGAGTCAGCGTATATTGACCCGGAGCGAGTGGTGGCACCGGGACCCAAATGCAGAGGCTGCGCGAAGCGAGTGGCATCGGTGGTGGCATTGCCGTGTCGGCACTTATGCATCTGCCGGGAATGCGACGCGCATTTCCGAGCGTGTCCCGTTTGCCTCACACTCATAAATTCAACCGTTGAAGTCTTCCTCTCTTAG 1017 0.5418 MAVQAQYPSNILLLNRNEQEGHDYSLQPQPGGLLDQSHVLFNNGGTNSRKRGREATAATCVAQTSPNGVDPFSLQSQPLRLVELSQLHNQQPNVVSTGLRLSFGDHQQQRQQRLQSQQQHQQACQPYAFLSLLPEGFASQIKQQRDEIDQFLQAQGEQLRRALAEKRQRHYRELLSAAEESVARRLREKEVEMEKATRRNAELEARAAQLSVEAQVWQAKAKAQEATATSLQAQLQLQQAMMSGGAQDKGGGCFAEDGGLSCAVGCGEGQPEDAESAYIDPERVVAPGPKCRGCAKRVASVVALPCRHLCICRECDAHFRACPVCLTLINSTVEVFLS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0442 338 Coils Coil 179 220 - -
Lele49g0442 338 Pfam Zinc finger, C3HC4 type (RING finger) 290 331 - -
Lele49g0442 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 338 IPR013083 -
Lele49g0442 338 PIRSF SBP1_RNase_bind 1 338 IPR017066 -
Lele49g0442 338 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 42 335 IPR017066 -
Lele49g0442 338 ProSiteProfiles Zinc finger RING-type profile. 291 325 IPR001841 -
Lele49g0442 338 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 273 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0442 Lele-ChrLele49 2638756 2640089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0442 291 336 Miscellaneous Gene Families AT2G21380 34.783 3.65e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0442 49 2638756 2640089 Lele53g0290 53 2404176 2405537 CCT
Lele49g0442 49 2638756 2640089 Lele54g0287 54 2430624 2431965 CCT
Lele49g0442 49 2638756 2640089 Lele55g1198 55 18612342 18613710 CCT
Lele49g0442 49 2638756 2640089 Lele56g1152 56 14975361 14976701 CCT
Lele49g0442 49 2638756 2640089 Lele49g0442 49 2638756 2640089 ECH
Lele49g0442 49 2638756 2640089 Lele51g0458 51 2684912 2686247 hybridization
Lele49g0442 49 2638756 2640089 Lele52g0473 52 2889278 2890561 hybridization