Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1198 ATGGCTGTTCAGGCTCAATACCCTTCTAATATCCTCCTCCTTCACAACAACAGTAACCTACAAGAAGATTATGACTGTTCAATACCACCTGCAGAAGCAATCCTTCATCATTCTCACATGTTATTCACCAATGGAGGTACTACTAATCCTGGAAAAAGATCGAGAGAAAGTAGACCGCCAATTGTGGTTGCTCAGGCGGCCCCCAATGTTCTGAATTCTATTTCTCTCCAATCTCATCAGCTTCTACAAGTCTCTCAACTGCATAACCATCGGCAGAATAGCGTTTCCACCGGACTCCGCTTATCCTCCTTGGCCGATCAACAATCACTTCAGTTACCTCACCACCAACAACATCAACAATCATCACAACATTCACAACATGGCGCTCATTACTCTCCTGTATCAACTCTTTCTTCTCAAGATTTTGTCTCTCAAATCAAACAACACCGAGACGAAATCGACCAATTTCTTCGAGCACAGGAAGCGGAATTACATCGGACATTAGCGGAGAAAAGGCAGAGACATTACCGAGAGCTACTCACCACGGCGGAAGAAACCGTGGCCCGGCGGTTGAGGGAGAAAGACCTAGAGGTGGAGAAAGTAACGCGCATGAACGCCGAGTTAGAGGCACGGGCCGCCCAACTCACCGCCGAAGCACAGCTTTGGCAGGCAAAAGCAAAAGCACAAGAAGCAACGGCCGCTTCCTTACAGGCGCAACTACAACACGCCATGATGAATGGTACGGCCTTAGAAAAGAGAGACGAGGGCGGGCTATCGTGCGCGGCAGGCGCCGACGACGCCGAGTCGGCTTACGTTGACCCGGGCCGAGTCGAACCGACCGGACCGAAATGCAGAGGGTGTGGGAAGCGGGTTGCTTCGGTGGTGGTATTGCCTTGTCGGCATCTTTGCATGTGTCCCAAATGCGACGGCCATTTCCGTGCATGTCCGGTTTGCCTTTCCCTCAAAGATTCCACCGTTGAGGTTTTCTTATCTTAG 996 0.505 MAVQAQYPSNILLLHNNSNLQEDYDCSIPPAEAILHHSHMLFTNGGTTNPGKRSRESRPPIVVAQAAPNVLNSISLQSHQLLQVSQLHNHRQNSVSTGLRLSSLADQQSLQLPHHQQHQQSSQHSQHGAHYSPVSTLSSQDFVSQIKQHRDEIDQFLRAQEAELHRTLAEKRQRHYRELLTTAEETVARRLREKDLEVEKVTRMNAELEARAAQLTAEAQLWQAKAKAQEATAASLQAQLQHAMMNGTALEKRDEGGLSCAAGADDAESAYVDPGRVEPTGPKCRGCGKRVASVVVLPCRHLCMCPKCDGHFRACPVCLSLKDSTVEVFLS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1198 331 Pfam Zinc finger, C3HC4 type (RING finger) 283 319 - -
Lele55g1198 331 PIRSF SBP1_RNase_bind 1 331 IPR017066 -
Lele55g1198 331 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 266 330 - -
Lele55g1198 331 MobiDBLite consensus disorder prediction 108 143 - -
Lele55g1198 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 331 IPR013083 -
Lele55g1198 331 ProSiteProfiles Zinc finger RING-type profile. 284 318 IPR001841 -
Lele55g1198 331 Coils Coil 191 246 - -
Lele55g1198 331 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 49 328 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1198 Lele-ChrLele55 18612342 18613710 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0442 49 2638756 2640089 Lele55g1198 55 18612342 18613710 CCT
Lele53g0290 53 2404176 2405537 Lele55g1198 55 18612342 18613710 hybridization
Lele54g0287 54 2430624 2431965 Lele55g1198 55 18612342 18613710 hybridization