Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0290 ATGGCTGTTCAGGCTCAATATCCTTCTAATATCCTCCTTCACAACAACAGTAACCTACAAGAAGATTATGACTGTTCAATACCACCTGCAGATGCAATCCTTCATCAATCTCACATGTTATTCACCAATGGAGGTACTACTACTAATCCTGGAAAAAGATCGAGAGAAAGTAGACAGCCAATTGTGGTTGCTCAGGCGGCCCCCAACGTTCTGAATTCTATTTCTCTGCAATCTCATCAGCTTCTACACGTCTCTCAACTGCATAACCCCCGGCAGAATAGCGTTTCCACAGGACTCCGCTTATCCTCCTTCGCGGATCAACAACCACTTCAGTTACCTCACCACCACCACCAACAATCATCACAACATGGCGCTCATTACTCTCCTGTATCAACTCTTTCTTCTCAAGATTTTGTCTCTCAAATCAAACAACACCGAGATGAAATCGACCAATTTCTTCGAGCACAGGAAGCCGAATTACATCGGACATTAGCGTTGAAAAGGCAGAGACATTACCGAGAGCTACTCACCACGGCAGAAGAAACCGTGGCCCGCCGGTTGAGGGAGAAAGACCTAGAGGTTGAGAAAGTAACGCTCATGAACGCAAAGTTAGAGGCACGCGCCGCGCAACTCACCGCCGAAGCACAACTTTGGCAGGCAAAAGCAAAAGCACAAGAAGCAACGGCCGCGTCCTTACAGGCGCAACTGCAACACGCCATGATGAATGGTACGGCCTTAGAAAAGAGAGACGAAGGCAGGCTATCGTGCGCGGTAGGCGCCGACGATGCCGAGTCGGCTTATGTTGACCCGAGCCGAGTCGAACCCATCAGACCGAAATGCAGAGGGTGTGGGAAGCGGGTTGCTTCGGTGGTGGTATTGCCGTGTTGGCATCTTTGCATGTGTCCCAAATGCGACGGCCATTTCCGTGCATGTCCTGTTTGCCTTTCCCTCAAAGATTCAACCGTTGAGGTTTTCTTATCTAGGGCTTAA 990 0.4939 MAVQAQYPSNILLHNNSNLQEDYDCSIPPADAILHQSHMLFTNGGTTTNPGKRSRESRQPIVVAQAAPNVLNSISLQSHQLLHVSQLHNPRQNSVSTGLRLSSFADQQPLQLPHHHHQQSSQHGAHYSPVSTLSSQDFVSQIKQHRDEIDQFLRAQEAELHRTLALKRQRHYRELLTTAEETVARRLREKDLEVEKVTLMNAKLEARAAQLTAEAQLWQAKAKAQEATAASLQAQLQHAMMNGTALEKRDEGRLSCAVGADDAESAYVDPSRVEPIRPKCRGCGKRVASVVVLPCWHLCMCPKCDGHFRACPVCLSLKDSTVEVFLSRA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0290 329 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 262 326 - -
Lele53g0290 329 ProSiteProfiles Zinc finger RING-type profile. 280 314 IPR001841 -
Lele53g0290 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 327 IPR013083 -
Lele53g0290 329 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 47 324 IPR017066 -
Lele53g0290 329 MobiDBLite consensus disorder prediction 109 130 - -
Lele53g0290 329 PIRSF SBP1_RNase_bind 1 327 IPR017066 -
Lele53g0290 329 Coils Coil 187 242 - -
Lele53g0290 329 Pfam Zinc finger, C3HC4 type (RING finger) 279 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0290 Lele-ChrLele53 2404176 2405537 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0442 49 2638756 2640089 Lele53g0290 53 2404176 2405537 CCT
Lele53g0290 53 2404176 2405537 Lele55g1198 55 18612342 18613710 hybridization
Lele53g0290 53 2404176 2405537 Lele56g1152 56 14975361 14976701 hybridization