Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0287 ATGGCCGTTCAGGCTCAATATCCTTCTAATATCCTCCTCCTTCACAACAACAGCAACCTGCAAGAAGATTATGACTATTCAATACCACCTGCAGAAGTACTTCTTCGTCAATCTCACATGTTATTCACCAATGGAGGTAGTACTAACCTTGGAAAAAGATCAAGAGAAAGTAGACCGTCCATTGCGGTTGCTCAGGCAGCCCCCAATGTTCTGAATTCTATTTCTCTGCAATCTCCTCAGCTTCTACAAGTCTCTCAACTGCATAACCAACACAATAGCGTTTCCACCGGACTCCGTTTATCCTCCTTAACCGATCAGCAACCACTTCAGTTACCTCACCACCACCAACAACAATCACAACTTGGCTCTCATTACTCGCCTGTGTCAACTCTTTCTTATCTGGATTTTGTCTCTCAAATCAAACAACACCGAGATGAAATTGACCAATTTCTTCGAGCACAAGAAGCGGAATTACATCGGACATTAGCGGAGAAAAGGAAGAGACATTACCGAGAGCTACTCACCACGGCGGAAGAAACCGTGGCGCGGCGGATGAGGGAGAAAGACCTAGAGGTGGAGAAAGTCACGCGCATGAACGCCGAGTTAGAGGCACGCGCCGCCCAACTCACCGCCGAAGCACAGCTTTGGCAGGCAAAAGCAAAAGCACAAGAAGCAACGGCCACTTCCTTACAGGCCCAACTGCAACACGCCATGATGAATGGAACGGCCAAAGAAAAGAGAGACGAGGGCTGGCTATCGTGCGCGGCGGGAGCCGACGACGCCGAGTCGGCTTACGTCGACCCGGACCGAGTTGAACCGATCGGACCGAAATGCAGAGGGTGCGGGAAGCGGGTGGCTTCGGTGGTGGTATTGCCGTGTCGGCATCTGTGCATGTGTCCCAAATGCGACGGCCATTTCCGAGCATGTCCGGTTTGCCTTTCCCTCAAAGATTCAACCGTTGAGGTTTTCTTAACTTAG 978 0.5051 MAVQAQYPSNILLLHNNSNLQEDYDYSIPPAEVLLRQSHMLFTNGGSTNLGKRSRESRPSIAVAQAAPNVLNSISLQSPQLLQVSQLHNQHNSVSTGLRLSSLTDQQPLQLPHHHQQQSQLGSHYSPVSTLSYLDFVSQIKQHRDEIDQFLRAQEAELHRTLAEKRKRHYRELLTTAEETVARRMREKDLEVEKVTRMNAELEARAAQLTAEAQLWQAKAKAQEATATSLQAQLQHAMMNGTAKEKRDEGWLSCAAGADDAESAYVDPDRVEPIGPKCRGCGKRVASVVVLPCRHLCMCPKCDGHFRACPVCLSLKDSTVEVFLT 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0287 325 Coils Coil 185 226 - -
Lele54g0287 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 325 IPR013083 -
Lele54g0287 325 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 260 324 - -
Lele54g0287 325 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 52 322 IPR017066 -
Lele54g0287 325 PIRSF SBP1_RNase_bind 1 325 IPR017066 -
Lele54g0287 325 Pfam Zinc finger, C3HC4 type (RING finger) 277 313 - -
Lele54g0287 325 ProSiteProfiles Zinc finger RING-type profile. 278 312 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0287 Lele-ChrLele54 2430624 2431965 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0442 49 2638756 2640089 Lele54g0287 54 2430624 2431965 CCT
Lele54g0287 54 2430624 2431965 Lele55g1198 55 18612342 18613710 hybridization
Lele54g0287 54 2430624 2431965 Lele56g1152 56 14975361 14976701 hybridization