Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0473 ATGGCAGTTCAAGCTCAATACCCATCCAATATTCTCCTCCTCAACAGAAACGAACAGGAAGGGCATGATTATTCGTTACAGCCACAGCCAGGAGGGCTTCTTGATCAGTCCCATGTCTTATTCAACAATGGAGGTACTAATAATTCTCGCAAGAGAGGAAGAGAAGCAACGGCGGCCACCTTCTCTCTGCAATCTCAGCCTCCTCAGCTCGTAGAACTCTCTCAACTCCATAACCGACAACCAAATGTGGTCTCCACGGGCCTCCGATTATCATTCGGCGACCATCAACAGCAACGACAACAAAGACTACAATTACAGCAACAACAACGCCAACAACAACAACATCAACAACAACAAGCCTGTCAGCCTTATGCTTTCTTATCTCTATTATCGGAAGGATTTGGCTCCCAAATCAAACAACAGCGTGATGAGATTGATCAATTTCTTCAGGCCCAGGGGGAACAATTGCGACGAGAATTAGCCGAGAAGAGGCAGAGGCATTATCGTGCCCTTCTAAGCGCGGCGGAAGAATCGGTGGCCCGGCGGTTGAGAGAGAAAGAAGTTGAAATGGAAAAGACAACGCGCAGGAATGCCGAGTTAGAAGCGCGCGCTGCGCAACTTAGCGTGGAGGCGCAGGCTTGGCAGGCAAAGGCAAAGGCACAAGAGGCAACGGCGGCGTCGCTGCAAGCGCAACTGCAACAGGCTATGATGAGCGTGGGTGCGCAGGATAAAGTAGGAGGGTGTTTCGCGGAGGACCGGGGGCTATCTTGCGCGGCGGGTGGTGGGGAGGGGCAACCGGAGGACGCCGAGTCGGCTTATATTGACCCGGACCGAGTGGCGGCATCGGGACCCAAATGCAGAGGCTGTGGGAAGCGAGTGGCATCGGTGGTGGCATTGCCGTGTCGGCACTTGTGCATCTGCACGGAATGCGACGCGCATTTTAGAGCGTGTCCCTTATGCCTGACACTCATAAATTCAACCGTTGAAGTCTTCCTCTCTTAG 1002 0.5299 MAVQAQYPSNILLLNRNEQEGHDYSLQPQPGGLLDQSHVLFNNGGTNNSRKRGREATAATFSLQSQPPQLVELSQLHNRQPNVVSTGLRLSFGDHQQQRQQRLQLQQQQRQQQQHQQQQACQPYAFLSLLSEGFGSQIKQQRDEIDQFLQAQGEQLRRELAEKRQRHYRALLSAAEESVARRLREKEVEMEKTTRRNAELEARAAQLSVEAQAWQAKAKAQEATAASLQAQLQQAMMSVGAQDKVGGCFAEDRGLSCAAGGGEGQPEDAESAYIDPDRVAASGPKCRGCGKRVASVVALPCRHLCICTECDAHFRACPLCLTLINSTVEVFLS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0473 333 MobiDBLite consensus disorder prediction 22 58 - -
Lele52g0473 333 Pfam Zinc finger, C3HC4 type (RING finger) 285 326 - -
Lele52g0473 333 Coils Coil 98 118 - -
Lele52g0473 333 PIRSF SBP1_RNase_bind 1 333 IPR017066 -
Lele52g0473 333 ProSiteProfiles Zinc finger RING-type profile. 286 320 IPR001841 -
Lele52g0473 333 Coils Coil 146 166 - -
Lele52g0473 333 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 268 332 - -
Lele52g0473 333 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 330 IPR017066 -
Lele52g0473 333 MobiDBLite consensus disorder prediction 39 58 - -
Lele52g0473 333 FunFam Baculoviral IAP repeat containing 7 295 331 - -
Lele52g0473 333 Coils Coil 183 238 - -
Lele52g0473 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 333 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0473 Lele-ChrLele52 2889278 2890561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0473 286 333 Miscellaneous Gene Families AT2G21380 35.417 5.63e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0473 52 2889278 2890561 Lele52g0473 52 2889278 2890561 ECH
Lele49g0442 49 2638756 2640089 Lele52g0473 52 2889278 2890561 hybridization
Lele50g0478 50 2819154 2820985 Lele52g0473 52 2889278 2890561 hybridization