Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1161 ATGTCCCTTCAGAACCCACCGTTTAATGACCTCCCAGACGCATCCCCAAAACCAGACAAGAAAAGTTTCGTCACTTCTCTAATGGAAGCAGCGACACTCCGTACACCGTCCTTCAAAGAAGACACCTACTTCGTTTCCCACTTGAAATCCTCCGAGAAGAAAGCCCTACAAGAGCTCAAAAACAAACTCGCAGCCTCCGAGGTTTCGGATTCGTCCATGTGGGGTATTCCCCTGCTCGGCGACGACGACAAAGCTGACGTCATACTGTTGAAGTTTCTCCGAGCTAGAGACTTCAGGGTGGGAGATTCGCTCAACATGCTTCTGAAATGCTTGGCTTGGAGGAAGGAGTTCGGAGCAGACGACGTCGTTGAGGAGGACTTGGGATTCAAAGAGCTCGAAGGCGTTGTCGCCTACATGCTGGGGTATGATAAAGAAGGGCACCCTGTTTGCTACAATGCGTATGGGATTTTCAGAGACAAAGAAATGTACGAAAGGATTTTCGGTGACGAAGAGAAGATGAAGAAGTTCTTGAGATGGAGAGTTCAAGTTCTTGAAAGAGGAATCAAGCTTCTTCATTTCAAACCAGGTGGGGTTAATTCTCTGATTCAGGTCACCGATTTGAAAGACATGCCCAAGAGGGAACTCAGGGCAGCTTCCAATCATATTCTCTCTCTGTTTCAAGACAATTATCCAGAAATGGTGGCTCGTAAGATTTTCATTAATGTGCCCTGGTACTTCAGCATGCTGTATTCGATGTTCAGTCCATTTTTGACCCAAAGAACAAAGAGCAAATTTTTGATCTCCAAGGAAGGAAATGCTGCTGAGACGCTCTACAAATTCATAAAGCCTGAGGATATTCCAGTTCAGTATGGAGGACTGAGTCGGCAGAGTGATTTGCAGAGTGGTCCTCCTAAACCCGCTTCTGAATTCACTGTTAAAGGAGGAGAGAAGGTGAACATCCAAATCGAAGGAATTGAGGGTGGTGCAACAATAACATGGGACATAGTGGTGGGAGGGTGGGAATTAGAGTACAGTGCAGAGTTTGTGCCAAGTGCAGAAGGAAGCTACAGCATCGCAGTAGAGAAGGCAAGGAAGATTGCAGCCTCAGAAGAAGCCATTCACAACTCTTTCACCACAAAAGAAGCAGGCAATCTCGTTCTCTCTGTTGACAACTTCGCTTCCAGGAAGAAAAAGGTCGCTGCTTATCGCTACTTTGTCCGCAAATGCACCACCAACAACGTTGCCTGA 1248 0.4671 MSLQNPPFNDLPDASPKPDKKSFVTSLMEAATLRTPSFKEDTYFVSHLKSSEKKALQELKNKLAASEVSDSSMWGIPLLGDDDKADVILLKFLRARDFRVGDSLNMLLKCLAWRKEFGADDVVEEDLGFKELEGVVAYMLGYDKEGHPVCYNAYGIFRDKEMYERIFGDEEKMKKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRAASNHILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFLISKEGNAAETLYKFIKPEDIPVQYGGLSRQSDLQSGPPKPASEFTVKGGEKVNIQIEGIEGGATITWDIVVGGWELEYSAEFVPSAEGSYSIAVEKARKIAASEEAIHNSFTTKEAGNLVLSVDNFASRKKKVAAYRYFVRKCTTNNVA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1161 415 Gene3D GOLD domain 303 406 - -
Lele43g1161 415 FunFam SEC14 cytosolic factor family protein 44 116 - -
Lele43g1161 415 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 309 407 IPR036598 -
Lele43g1161 415 Pfam CRAL/TRIO, N-terminal domain 55 108 IPR011074 -
Lele43g1161 415 FunFam SEC14 cytosolic factor family protein 133 308 - -
Lele43g1161 415 SUPERFAMILY CRAL/TRIO domain 130 294 IPR036865 -
Lele43g1161 415 SUPERFAMILY CRAL/TRIO N-terminal domain 38 126 IPR036273 -
Lele43g1161 415 SMART CRAL_TRIO_N_2 85 110 IPR011074 -
Lele43g1161 415 ProSiteProfiles GOLD domain profile. 274 408 IPR009038 -
Lele43g1161 415 Gene3D - 44 116 - -
Lele43g1161 415 PANTHER PATELLIN-1 25 408 IPR044834 GO:0008289
Lele43g1161 415 Pfam CRAL/TRIO domain 133 292 IPR001251 -
Lele43g1161 415 MobiDBLite consensus disorder prediction 1 21 - -
Lele43g1161 415 CDD SEC14 129 293 IPR001251 -
Lele43g1161 415 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 298 IPR001251 -
Lele43g1161 415 Gene3D - 120 302 IPR036865 -
Lele43g1161 415 SMART sec14_4 131 295 IPR001251 -
Lele43g1161 415 Coils Coil 49 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1161 Lele-ChrLele43 19977950 19979819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1161 89 287 Acyl Lipid Metabolism Gene Families AT1G55840 30.952 1.27e-12 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1161 43 19977950 19979819 Lele37g1377 37 22592083 22592769 CCT
Lele43g1161 43 19977950 19979819 Lele38g1254 38 23362908 23363579 CCT
Lele43g1161 43 19977950 19979819 Lele39g0046 39 336726 337388 CCT
Lele43g1161 43 19977950 19979819 Lele40g1196 40 21858079 21858750 CCT
Lele43g1161 43 19977950 19979819 Lele43g1161 43 19977950 19979819 ECH
Lele41g0201 41 1625332 1627249 Lele43g1161 43 19977950 19979819 hybridization
Lele42g0195 42 1603969 1607223 Lele43g1161 43 19977950 19979819 hybridization