Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0195 ATGTCCCTCCAAAACCCACCGTTCAAAGACCTCCCAGACGCATCCCCAAAACCAGACAAGAAAAGCTTCGTCACTTCTCTAATGGAAGCAGCAACACTCCGTACACCATCCTTCAAAGAAGACACCTACTTCATTTCCCACCTGAAATCCTCCGAGAAGAAAGCCCTTCAAGAGCTCAAAAAAAAGCTCGCTGCCTCCGAGGTTTCGTATTCGTACATGTGGGGCATCCCCCTCCTCGGCGGCGACGACAGAGCTGAAGTCATACTGTTGAAATTTCTCCGAGCGAGGGACTTCAGGGTGGGAGATTCGCTCAACATGCTTCTGAAATGTTTGGCTTGGAGGAAGGAGTTCGGAGCCGACGACGTCGTTGAAGAGGACTTGGGATTCAAAGAGCTCGAAGGGGTTGTCGCCTACATGCAGGGGTATGATAAAGAAGGACACCCTGTTTGCTACAATGCGTATGGTATTTTCAGAGACAAAGAAATGTACGAAAGGATCTTCGGTGACGAAGAGAAGCTGAAGAAGTTCTTGAGATGGAGAGTTCAAGTTCTTGAAAGAGGAATCAAGCTTCTTCATTTCAAACCAGGTGGGGTTAATTCTCTGATTCAGGTCACCGATTTGAAAGACATGCCCAAGAGGGAGCTCAGGGAGGCTTCCAATCACATTCTCTCTCTGTTCCAAGACAATTATCCAGAAATGGTGGCTCGGAAGGGTGGAGCAACGATAACATGGGACATAGTGGTGGGAGGTTGGGATTTAGAGTACAGTGCAGAGTTTGTGCCAAGTGCAGAAGGAAGCTACAGCATCGCAGTAGAGAAGGCAAGGAAGATTGGAGCCTTAGAGGAAGCAATTCACAACTCTTTCACAACAAAAGAAGAAGGCAATCTTATCCTCTCTGTTGATAACTTTGCTTCCAGAAAGAAAAAAGTCGCGGCTTATCGCTACCTTAACTTGAGCCAAGCCAAAATAGCTTCTGTTGTCATTCCCAATGCTCTCCTAAGGGGTCGTAGGCCTAGGGTTCCACTTTCGTCCCAAATAGCAGGAAATCACAGCGAGAACAGTATTCCGCCCCTCTGGGACCTGCCTGTTGCTGCTGCTCCCTCTCATTGTTTCATCTCCTTCGACCCACTCCATAGTGGCTGCTGCGGCTGCAGAGTGGGCAAGCTCGAAGACGCTTCGGCGATGGCGACCAAACAGGATTCGTCAGAGGCATCCTCTGCCTGGGTTCCAGATCCCATAACTGGTTAA 1248 0.4904 MSLQNPPFKDLPDASPKPDKKSFVTSLMEAATLRTPSFKEDTYFISHLKSSEKKALQELKKKLAASEVSYSYMWGIPLLGGDDRAEVILLKFLRARDFRVGDSLNMLLKCLAWRKEFGADDVVEEDLGFKELEGVVAYMQGYDKEGHPVCYNAYGIFRDKEMYERIFGDEEKLKKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELREASNHILSLFQDNYPEMVARKGGATITWDIVVGGWDLEYSAEFVPSAEGSYSIAVEKARKIGALEEAIHNSFTTKEEGNLILSVDNFASRKKKVAAYRYLNLSQAKIASVVIPNALLRGRRPRVPLSSQIAGNHSENSIPPLWDLPVAAAPSHCFISFDPLHSGCCGCRVGKLEDASAMATKQDSSEASSAWVPDPITG 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0195 415 SUPERFAMILY CRAL/TRIO N-terminal domain 37 126 IPR036273 -
Lele42g0195 415 Pfam CRAL/TRIO domain 133 236 IPR001251 -
Lele42g0195 415 SMART CRAL_TRIO_N_2 85 110 IPR011074 -
Lele42g0195 415 CDD SEC14 129 236 IPR001251 -
Lele42g0195 415 PANTHER PATELLIN-1 24 237 IPR044834 GO:0008289
Lele42g0195 415 SUPERFAMILY CRAL/TRIO domain 130 236 IPR036865 -
Lele42g0195 415 SMART sec14_4 131 289 IPR001251 -
Lele42g0195 415 MobiDBLite consensus disorder prediction 1 20 - -
Lele42g0195 415 Pfam CRAL/TRIO, N-terminal domain 55 108 IPR011074 -
Lele42g0195 415 Gene3D - 44 237 IPR036865 -
Lele42g0195 415 FunFam SEC14 cytosolic factor family protein 44 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0195 Lele-ChrLele42 1603969 1607223 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0195 42 1603969 1607223 Lele37g1377 37 22592083 22592769 CCT
Lele42g0195 42 1603969 1607223 Lele38g1254 38 23362908 23363579 CCT
Lele42g0195 42 1603969 1607223 Lele39g0046 39 336726 337388 CCT
Lele42g0195 42 1603969 1607223 Lele40g1196 40 21858079 21858750 CCT
Lele42g0195 42 1603969 1607223 Lele42g0195 42 1603969 1607223 ECH
Lele42g0195 42 1603969 1607223 Lele43g1161 43 19977950 19979819 hybridization
Lele42g0195 42 1603969 1607223 Lele44g1152 44 20127783 20129871 hybridization