Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0468 ATGATCGGAAGGTCGAGGACGACGTTAACGGTGGAGGTGTACGACGGCTCCGGGGAGGAGTGCCAGATCGAAGGGTGTTTCTCGCAGCGGAGCTGCAAGATCTACAACGGCGAGAGGAAAGTGGTGGCGGAGATTCGACGGAAGGTGGACCCCACCACGAATGTGATGCTGGGTAAGGAAGTGTTCTCACTCTATGTTAAGGCAGGCTTCGATGGGGCCTTCGCGATGGGATTGGTCCTGGTTCTGGATCAGATGAACTGTGATAGTTACGTCGATAATGGAGCACCAGAGCATGTGGTACACCCTTCCGCAGAGTATTAA 321 0.5452 MIGRSRTTLTVEVYDGSGEECQIEGCFSQRSCKIYNGERKVVAEIRRKVDPTTNVMLGKEVFSLYVKAGFDGAFAMGLVLVLDQMNCDSYVDNGAPEHVVHPSAEY 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0468 106 SUPERFAMILY Tubby C-terminal domain-like 6 87 IPR025659 -
Lele38g0468 106 Pfam LURP-one-related 10 81 IPR007612 -
Lele38g0468 106 Gene3D - 1 90 IPR038595 -
Lele38g0468 106 PANTHER - 8 86 IPR007612 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0468 Lele-ChrLele38 3779475 3779795 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0604 43 5399573 5400166 Lele38g0468 38 3779475 3779795 CCT
Lele44g0558 44 4355380 4355960 Lele38g0468 38 3779475 3779795 CCT
Lele41g0795 41 17714831 17718471 Lele38g0468 38 3779475 3779795 CCT
Lele42g0781 42 20791106 20795251 Lele38g0468 38 3779475 3779795 CCT
Lele38g0468 38 3779475 3779795 Lele38g0468 38 3779475 3779795 ECH
Lele38g0468 38 3779475 3779795 Lele39g0925 39 18195775 18196726 hybridization
Lele38g0468 38 3779475 3779795 Lele40g0440 40 3640381 3641290 hybridization