Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1173 ATGGCGTCGTTTGAGGACCCGGGAGTTTGTGGAAAACTTAGCTGCTGTTTGCCGAGAAAGAGAGATCTTAGTCTCACACAAAGAAGTTCTAACACTCCCATAATGGTCCGTCGGCGACTCGTCGTTTTTCTTTCCCTCACTACGCTGCTTCTCCTGTCCTCCTTCTCTCTGACTTTATGCAAGACCGTCGAAAACGACAACGACGACGAAGATCTCAGCTTTCTCGAAGAAGCTGATGATAGCTCTGCCTCACACCATGATTACCCAGATCTGGATCATTTCGACGATGGTTCCGTCGGCGAAGATGATTTTGAGGACTTCGCTGGCTTCGACGAGTCGGATGCGGATGCGGATGCGGAGGGATACAAAGAACCCGAGGTGGATGACAAAGATGTTGTTGTATTGAAAGAGAGTAACTTCAGTGACGTTGTGAAGAAGAATCAGTTTGTTATGGTGGAATTTTACGCGCCATGGTGTGGTCACTGCCAGGCTTTGGCTCCAGAGTATGCTGCGGCCGCCACCGAATTGAAGGGCGAGAATGTGATTTTGGCGAAGGTGGATGCCACGGAGGAGAATGAATTAGCCCAGGAGTACGAAATTCAGGGATTCCCCACAGTCTATTTCTTTGTCGATGGGGTTCACAAGTCTTACAATGGCCAGAGGAGCAAAGATGCTATAGTAAACTGGATTAAGAAGAAGATAGGACCTGGTCTTTCCAATATAACTACATTGGATGATGCCGAGCGCATATTGACCTCTGAAAACAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTGGGTCCTGAGAGTGAGGAGCTAGCTGCTGCATCCCGACTTGAGGATGATGTCAATTTTTATCAAACTGTTAACCCTGATGTGGCAAAGCTTTTCCATATTGACCCACATGTCAAACGTCCTGCTTTGATCCTGCTCAAGAAAGACTATGAGAAATTGAACCATTTTGATGACCAATTTGTAAAATCTGCAATAGCAGAATTTGTGTTCTCGAACAAACTACCTCTGGTCACAACTTTTACAAGAGAAAGTGCCCCATCAGTTTTTGACAACCCAATCAAGAAACAGCTGTTGCTCTTTGTGACTTCAAATGATTCAGAGAAGTTACTCCCAGCATTCCAAGAAGCAGCGAAATTTTTCAAGGGAAAGCTGATCTTTGTACATGTGGAACTGGATAATGAAGATGTTGGAAAGCCCGTTTCTGAATTCTTTGGCATCAGTGGGAATGCTCCAAAAGTATTATATTTCTCTCCCCTTCTGTATTCTGTACTTGCATACACTGGAAATGATGACGGAAAGAAATTTGTGCTTGATGGAGAAGTGACTGTTGACAAAATTAAGGCATTTGGGGATGATTTCCTTGAAGACAAGCTAAAACCATTCTACAAGTCAGATCCAGTTCCTGAAAATAATGACGGGGATGTGAAAATAGTGGTTGGGGATAACTTTGACGAGATTGTCTTGGATGAGTCTAAGGATGTTCTCCTTGAGATTTATGCACCCTGGTGCGGCCATTGCCAAGCTCTGGAACCAACATACAATAAGCTTGCTAAACATCTGCGTGGCATTGAGTCTCTTGTTATAGCCAAGATGGACGGAACAACAAACGAACATCCAAGGGCAAAGACTGATGGATTCCCCACCATTCTCTTCTTCCCAGCTGGAAACAAAAGTTTTGACCCTATTACCGTTGATACAGATCGTACAGTGGTAGCGTTTTATAAGTTCCTGAAGAAGCATGCATCAATCCCATTCAAGCTCCAGAAACCAACCACAAGTGCCAAATCCGCTAGTTCTGATGCCAAGGAGAGTCAGAGTCAGAGTGAGAATAGCAGTAACGATGTGAAGGATGAATTGTGA 1875 0.4443 MASFEDPGVCGKLSCCLPRKRDLSLTQRSSNTPIMVRRRLVVFLSLTTLLLLSSFSLTLCKTVENDNDDEDLSFLEEADDSSASHHDYPDLDHFDDGSVGEDDFEDFAGFDESDADADAEGYKEPEVDDKDVVVLKESNFSDVVKKNQFVMVEFYAPWCGHCQALAPEYAAAATELKGENVILAKVDATEENELAQEYEIQGFPTVYFFVDGVHKSYNGQRSKDAIVNWIKKKIGPGLSNITTLDDAERILTSENKVVLGFLNSLVGPESEELAAASRLEDDVNFYQTVNPDVAKLFHIDPHVKRPALILLKKDYEKLNHFDDQFVKSAIAEFVFSNKLPLVTTFTRESAPSVFDNPIKKQLLLFVTSNDSEKLLPAFQEAAKFFKGKLIFVHVELDNEDVGKPVSEFFGISGNAPKVLYFSPLLYSVLAYTGNDDGKKFVLDGEVTVDKIKAFGDDFLEDKLKPFYKSDPVPENNDGDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLRGIESLVIAKMDGTTNEHPRAKTDGFPTILFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPTTSAKSASSDAKESQSQSENSSNDVKDEL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1173 624 FunFam Protein disulfide-isomerase 475 588 - -
Lele30g1173 624 SUPERFAMILY Thioredoxin-like 475 587 IPR036249 -
Lele30g1173 624 ProSitePatterns Thioredoxin family active site. 151 169 IPR017937 -
Lele30g1173 624 Gene3D Glutaredoxin 119 234 - -
Lele30g1173 624 PRINTS Thioredoxin family signature 199 210 - -
Lele30g1173 624 PRINTS Thioredoxin family signature 150 158 - -
Lele30g1173 624 PRINTS Thioredoxin family signature 158 167 - -
Lele30g1173 624 CDD PDI_a_family 133 230 - -
Lele30g1173 624 Pfam Thioredoxin-like domain 273 454 - -
Lele30g1173 624 TIGRFAM ER_PDI_fam: protein disulfide isomerase 130 623 IPR005792 GO:0003756
Lele30g1173 624 Gene3D Glutaredoxin 335 474 - -
Lele30g1173 624 FunFam protein disulfide-isomerase A2 234 338 - -
Lele30g1173 624 MobiDBLite consensus disorder prediction 593 617 - -
Lele30g1173 624 CDD PDI_b'_family 359 459 - -
Lele30g1173 624 TIGRFAM pdi_dom: protein disulfide-isomerase domain 135 233 IPR005788 GO:0003756
Lele30g1173 624 SUPERFAMILY Thioredoxin-like 337 477 IPR036249 -
Lele30g1173 624 CDD PDI_b_family 239 337 - -
Lele30g1173 624 CDD PDI_a_PDI_a'_C 480 582 - -
Lele30g1173 624 SUPERFAMILY Thioredoxin-like 125 235 IPR036249 -
Lele30g1173 624 Gene3D Glutaredoxin 475 588 - -
Lele30g1173 624 PANTHER PROTEIN DISULFIDE ISOMERASE 42 621 - -
Lele30g1173 624 Pfam Thioredoxin 480 565 IPR013766 -
Lele30g1173 624 Pfam Thioredoxin 132 232 IPR013766 -
Lele30g1173 624 MobiDBLite consensus disorder prediction 593 624 - -
Lele30g1173 624 FunFam Protein disulfide-isomerase 121 233 - -
Lele30g1173 624 SUPERFAMILY Thioredoxin-like 241 349 IPR036249 -
Lele30g1173 624 ProSiteProfiles Thioredoxin domain profile. 458 587 IPR013766 -
Lele30g1173 624 Gene3D Glutaredoxin 235 334 - -
Lele30g1173 624 ProSiteProfiles Thioredoxin domain profile. 113 235 IPR013766 -
Lele30g1173 624 ProSitePatterns Thioredoxin family active site. 500 518 IPR017937 -
Lele30g1173 624 FunFam Protein disulfide-isomerase 339 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1173 Lele-ChrLele30 14623524 14627295 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1173 30 14623524 14627295 Lele09g1165 09 20740357 20745753 CCT
Lele30g1173 30 14623524 14627295 Lele10g1139 10 22715952 22718214 CCT
Lele30g1173 30 14623524 14627295 Lele12g0157 12 1193692 1196339 CCT
Lele30g1173 30 14623524 14627295 Lele31g1314 31 19194449 19198063 hybridization
Lele30g1173 30 14623524 14627295 Lele32g0223 32 1333501 1337102 hybridization