Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0793 ATGAAGGATGAAGCAGATGATCGAAAACGGGACAATTCATGGCCCCCGTCAAACTCGCCCTATCAGGGGGAGCCCGAACATGATCTGAAGCTTTGGGGAGTTTTTCTCTTCGGCTTGATTGGTGCTACTGCCACAACCTTCGCTGTTAGTCAGCTGCGGAGGACTGTTGATTGGTTCTATGCACAGATGTCCAGATCGCAATCATCATGGAAAGGAGGGACGGGCAATTCCTTTCGATCAGCTTTCCAGGAAGAAGCATGGAAAAGGTACAATAAGCGGCTCCAAGAAGAATACGAAGAGGAAATGGCGAGGGTGGAACGTATAAGGCGTATGCAAAGTGTGTTTAACAGGGAAAGGAGTAAGTACAGAAGAAGCTCTGAGAACTGGAGCCAAAACGGTCAAGGTGGAGCATATCATCAACATTTCCAAAGAGATGATTGGTATTGGAAGACTGATGCATCCTATAGAGATTGGAGGACCAATTATCAAGAAGCTCCAAGGGAAACTGGAAGCTATTCATTATCGCATCACTACTCAGTTTTGGGTCTTGACAGGTTTAGAACGACACCGTATACAGATGCAGAGATTAAGACCGCATTTAGGACAAAGGCAAAGGAGTATCATCCTGATCAGAACCAGGATAATAGAGAGGCTGCGGAGGCAAAATTCAAAGAGGTGGTGAATTCTTATGAAACGATAAAAAAGGAAAGAAAGAATCAGCTGTAA 726 0.4504 MKDEADDRKRDNSWPPSNSPYQGEPEHDLKLWGVFLFGLIGATATTFAVSQLRRTVDWFYAQMSRSQSSWKGGTGNSFRSAFQEEAWKRYNKRLQEEYEEEMARVERIRRMQSVFNRERSKYRRSSENWSQNGQGGAYHQHFQRDDWYWKTDASYRDWRTNYQEAPRETGSYSLSHHYSVLGLDRFRTTPYTDAEIKTAFRTKAKEYHPDQNQDNREAAEAKFKEVVNSYETIKKERKNQL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0793 241 Gene3D DnaJ domain 170 241 IPR036869 -
Lele28g0793 241 PRINTS DnaJ domain signature 218 238 IPR001623 -
Lele28g0793 241 PRINTS DnaJ domain signature 200 215 IPR001623 -
Lele28g0793 241 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 240 - -
Lele28g0793 241 SUPERFAMILY Chaperone J-domain 172 238 IPR036869 -
Lele28g0793 241 SMART dnaj_3 175 238 IPR001623 -
Lele28g0793 241 MobiDBLite consensus disorder prediction 1 24 - -
Lele28g0793 241 Pfam DnaJ domain 177 239 IPR001623 -
Lele28g0793 241 ProSiteProfiles dnaJ domain profile. 176 241 IPR001623 -
Lele28g0793 241 Coils Coil 91 111 - -
Lele28g0793 241 Coils Coil 216 236 - -
Lele28g0793 241 CDD DnaJ 177 234 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0793 Lele-ChrLele28 5065075 5068729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0793 177 240 Miscellaneous Gene Families AT5G49580 42.188 1.80e-06 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0798 01 4630648 4632787 Lele28g0793 28 5065075 5068729 CCT
Lele02g0770 02 4698029 4700016 Lele28g0793 28 5065075 5068729 CCT
Lele03g0791 03 4629337 4631468 Lele28g0793 28 5065075 5068729 CCT
Lele04g0788 04 4831504 4833636 Lele28g0793 28 5065075 5068729 CCT
Lele25g0794 25 5072601 5075545 Lele28g0793 28 5065075 5068729 hybridization
Lele26g0806 26 5129570 5133490 Lele28g0793 28 5065075 5068729 hybridization