Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0788 ATGGAAATGTCGTGGCTGGCTCGCTCTCTCGCTAACTCCCTCCGACTCGACCACGATGACGCCGTTGCCGACGATGATGATGAATGCGACGTCGTACCCAATCATCCACGCGACCCTCCTCCTACTTCACCTAGAATTCTCGAACCTCATCACATGCAACAACGACAACCGCAAGACAATGAGTTTGGTTTAGAAAATGAAGCGCATGCTCGAGGAGTCCAAGAGGATCTTCACGTATTCAAGCAAACTCTGACCCGTCAATTCTGGGGAATGGCGTCCTTCTTAGCTCCTCCCCCGCTAGATTCCCACCCTTCCTCTCCCTCTCATCGCCACACGCAATCTTTTCCCGCCGCATCCACTCGTAATCGATCAGAGCCTTCCGATTACTGTGTTTCCCAGAATGCTGAAGAATCAGAGGCGCCACAGATTCGGAGAGGCTTTTCCCACATCGAAGAAGCAAGTTTCCTCCGGGACGCCCCTGAAACTCTGGGCACAAATCCATATTCGATTTCGTTTCGATCCCAGCCTCTACGAAACGAGGAATCCGCAATGGAGGAGTATGATTTTGAAAGCATGGTTGGAATTACGGATGAGGTGTTGGCATTCGCTAGCAATATCGGGATGCATCCCGAGACGTGGTTGGATTACCCTGTAGACGAAGAAGATGACCCGGATGATTTTGACATGTCCGATGCCCAACAAGAGCATGCTATGGCTATTGAAAGACTTGATCCTAGATTAGCTGCGCTCAGAATTGAGCTGTGCCCTTGCCATATGAGTGAAAGTTACTTTTGGAAAGTCTATTTTGTACTTTTGCATTCCAGGCTTAATAAACAAGATGCTGAGATTTTATCTACACCTCAGGTTTTGGCAGCCAGAGCACTGTGGATGGAGGAGTTACATAAGCAAGAGAAACTGGAATCTGAATGTTTTGGAAGGAGCATTTCCTACTCAAGAGACACAGCTCCGCATGAAGACTTCTCTCCAAGATTTTTCGAGAATGCCTATTCTGGGGTCATGCCTCATGGAACGTACAGATTTGAGGATGATTATGAGAGTGAGAAGCACATGGGCGAAAGCTCTGAAGCACATTTCATCGATAAGGCGATCATCGAGGAAAACTCAAAAACTAAAACTGAGGAGGACAAGGACCTATCAAGGATTCGATCCTCTAAATTTGTTCTCGAGGACTATGAAGACGATGAGTATGGATGGCCAGAGGACGATATTGATGGAATTACGGTACCCGATGTAAATGAAGAAGACATATCTTTTAGTGACCTCGAGGACGATAATTATTCGTTGAAACCTTTTAAATCCAAAACAGAATCAAATGCTCCATGA 1344 0.4665 MEMSWLARSLANSLRLDHDDAVADDDDECDVVPNHPRDPPPTSPRILEPHHMQQRQPQDNEFGLENEAHARGVQEDLHVFKQTLTRQFWGMASFLAPPPLDSHPSSPSHRHTQSFPAASTRNRSEPSDYCVSQNAEESEAPQIRRGFSHIEEASFLRDAPETLGTNPYSISFRSQPLRNEESAMEEYDFESMVGITDEVLAFASNIGMHPETWLDYPVDEEDDPDDFDMSDAQQEHAMAIERLDPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKQDAEILSTPQVLAARALWMEELHKQEKLESECFGRSISYSRDTAPHEDFSPRFFENAYSGVMPHGTYRFEDDYESEKHMGESSEAHFIDKAIIEENSKTKTEEDKDLSRIRSSKFVLEDYEDDEYGWPEDDIDGITVPDVNEEDISFSDLEDDNYSLKPFKSKTESNAP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0788 447 MobiDBLite consensus disorder prediction 400 447 - -
Lele04g0788 447 Pfam BSD domain 225 280 IPR005607 -
Lele04g0788 447 Gene3D BSD domain 190 286 IPR035925 -
Lele04g0788 447 MobiDBLite consensus disorder prediction 400 428 - -
Lele04g0788 447 SUPERFAMILY BSD domain-like 194 281 IPR035925 -
Lele04g0788 447 SMART wurzfinal6 224 276 IPR005607 -
Lele04g0788 447 MobiDBLite consensus disorder prediction 24 57 - -
Lele04g0788 447 MobiDBLite consensus disorder prediction 105 139 - -
Lele04g0788 447 ProSiteProfiles BSD domain profile. 231 276 IPR005607 -
Lele04g0788 447 PANTHER BSD DOMAIN-CONTAINING PROTEIN 3 433 - -
Lele04g0788 447 MobiDBLite consensus disorder prediction 99 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0788 Lele-ChrLele04 4831504 4833636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0788 194 274 EF-hand Containing Proteins AT1G69030 31.868 1.38e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0788 04 4831504 4833636 Lele25g0794 25 5072601 5075545 CCT
Lele04g0788 04 4831504 4833636 Lele26g0806 26 5129570 5133490 CCT
Lele04g0788 04 4831504 4833636 Lele27g1282 27 19597377 19600345 CCT
Lele04g0788 04 4831504 4833636 Lele28g0793 28 5065075 5068729 CCT
Lele04g0788 04 4831504 4833636 Lele04g0788 04 4831504 4833636 ECH
Lele01g0798 01 4630648 4632787 Lele04g0788 04 4831504 4833636 hybridization
Lele02g0770 02 4698029 4700016 Lele04g0788 04 4831504 4833636 hybridization