Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0379 ATGGCGGAAGCTACGTCAGAAAAATCCTCTACTCTTGCCGAGCAATATTTTGTGAAAGAAAAAGAGGAGAAAACACAAACAGGCACAAAACCTGTGGAAGTCAAAGAAGTTGAAGTCTCCAAGGAGACGGCTTCTCTAGAAGCTGTTGCTGAGAAGGCTGTGGAAGCAGCCACTGCAGTTGCCCCTGCAGTTACTGAGGTAAGCAGTGAAGTTACTCCAGCTGCTGAAGAAAGCACTGAATCCAACTCTGATGCTTCTGAAGGAAGCCGCAATGCAACTACAGAGCAAAGTAGTGAAAATACTGATGAAAACTCAAGTGAACCAGAAGCAGCAGAAGAAACCCCAGAAATCAAGCTTGAGACTGCTCCTGCTGATTTCCGCTTCCCAACTACAAATCAAACAAGGCACTGCTTTACTCGATATGTCGAGTATCACCGATGCATAGCTGCAAAAGGAGAAGGTGCCCCAGAATGTGATAAGTTTGCAAAATATTACCGTTCTCTTTGCCCTGGGGAATGGATTGACAGATGGAATGAGCAAAGGGAGAACGGAACATTCCCTGGTCCTCTGTTAGTTCTCGACATACTAATGATCGGAGCTCCGCTAAGACTCTGGCCGAGGCATCAGGAGTCGTTCCCCATATGA 645 0.4651 MAEATSEKSSTLAEQYFVKEKEEKTQTGTKPVEVKEVEVSKETASLEAVAEKAVEAATAVAPAVTEVSSEVTPAAEESTESNSDASEGSRNATTEQSSENTDENSSEPEAAEETPEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCIAAKGEGAPECDKFAKYYRSLCPGEWIDRWNEQRENGTFPGPLLVLDILMIGAPLRLWPRHQESFPI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0379 214 CDD Cyt_c_Oxidase_VIb 117 189 IPR003213 GO:0005739
Lele28g0379 214 SUPERFAMILY Cytochrome c oxidase subunit h 116 189 IPR036549 GO:0005739|GO:0045277
Lele28g0379 214 PANTHER CYTOCHROME C OXIDASE SUBUNIT 6B 1 190 IPR003213 GO:0005739
Lele28g0379 214 MobiDBLite consensus disorder prediction 71 104 - -
Lele28g0379 214 Gene3D Cytochrome c oxidase, subunit VIb 113 191 IPR036549 GO:0005739|GO:0045277
Lele28g0379 214 Pfam Cytochrome oxidase c subunit VIb 127 186 IPR003213 GO:0005739
Lele28g0379 214 MobiDBLite consensus disorder prediction 1 32 - -
Lele28g0379 214 MobiDBLite consensus disorder prediction 14 32 - -
Lele28g0379 214 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 134 177 - -
Lele28g0379 214 FunFam Cytochrome c oxidase subunit 6B1 111 190 - -
Lele28g0379 214 MobiDBLite consensus disorder prediction 51 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0379 Lele-ChrLele28 2316843 2320415 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0379 28 2316843 2320415 Lele01g0144 01 846922 847875 CCT
Lele28g0379 28 2316843 2320415 Lele02g0149 02 831525 833793 CCT
Lele28g0379 28 2316843 2320415 Lele03g0154 03 822306 824632 CCT
Lele28g0379 28 2316843 2320415 Lele04g0146 04 829354 831637 CCT
Lele25g0365 25 2232482 2235162 Lele28g0379 28 2316843 2320415 hybridization
Lele26g0382 26 2307367 2310966 Lele28g0379 28 2316843 2320415 hybridization