Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0154 ATGGCCTTCTCTTCCACCCCTTCTCCTGATTCTCCACACCAACGAATCGCCGTCGGTAGCTTCATTGAAGATTACAATAACCGCGTCGATATCGTCTCCTTCAACGCCGACTCTCCCTCCATTCGTCCCCAACCTTCCCTCTCTTTCGACCACCCCTATCCGCCCACTAAACTTATGTTCCACCCAAACTCCCCCTCTTCTCTTCGGAAGTCCTCCTCCGACCTCCTCGCCACTTCCGGTGACTATCTTCGCCTCTGGGAGGTTCGTGAAAATTCCGTCGACACAATTTCACTCCTTAACAATAGCAAGACCAGCGAGTTCTGTGCCCCTTTGACCTCCTTCGATTGGAACGACATCGAACCCAAGAGAATTGGGACTTCCAGCATCGACACTACTTGTACTATTTGGGATATCGAAAAGGGGGTTGTCGAAACGCAGTTAATTGCGCACGATAAGGAGGTTTATGATATTTGCTGGGGTGAGGCTAGAGTGTTTGCCTCTGTTTCGGCGGATGGTTCTGTTAGAATCTTCGATCTGAGGGACAAGGAGCACTCCACGATCTTATACGAGAGTCCGCAGCCAGATACGCCTCTGCTGAGGTTGGCGTGGAATAAGCAGGATCTGAGGTACATGGCCACTATACTGATGGATAGCAATAAGATTGTGATATTGGATATTAGATCACCGACCATGCCGGTGGCGGAGTTGGAGAGGCATCGTGCTTGCGTGAATGCCATTGCTTGGGCTCCACAGAGTAGCAGGCATATATGTTCGGCGGGGGATGATTCGCAGGCCCTTATCTGGGAATTGCCTACTGTGGCTGGACCTAATGGAATTGATGCCATGTCTATGTATTCTGCTGGCTCTGAAATTAATCAACTGCAGTGGTCTGCTGCGCAGCCTAACTGGATTGCTATTGCTTTTGCGAACAAGATGCAGCTTTTGAAGTTTACCGTTTCCTTTTTTTGTGACATGGTTATATCTGAACTAATCAGAAATCTTGTTTCCTGGCTCAAATCTCATGATTCCAGTAAATTGGGTCCAGAGTTTGATTCATATGGTGATTCATATATGCTTTTCTCCTTCATCTGCTCAAGGTCATCTTCTTCTGCAATTAAAGGCACTGTTATTGAACTTGGATATCCTCGTGATGAGTTGGAAGATATCGACTCACTTGCATGA 1182 0.4763 MAFSSTPSPDSPHQRIAVGSFIEDYNNRVDIVSFNADSPSIRPQPSLSFDHPYPPTKLMFHPNSPSSLRKSSSDLLATSGDYLRLWEVRENSVDTISLLNNSKTSEFCAPLTSFDWNDIEPKRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTILYESPQPDTPLLRLAWNKQDLRYMATILMDSNKIVILDIRSPTMPVAELERHRACVNAIAWAPQSSRHICSAGDDSQALIWELPTVAGPNGIDAMSMYSAGSEINQLQWSAAQPNWIAIAFANKMQLLKFTVSFFCDMVISELIRNLVSWLKSHDSSKLGPEFDSYGDSYMLFSFICSRSSSSAIKGTVIELGYPRDELEDIDSLA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0154 393 SUPERFAMILY WD40 repeat-like 13 272 IPR036322 GO:0005515
Lele03g0154 393 PANTHER WD REPEAT CONTAINING PROTEIN 1 316 IPR045159 -
Lele03g0154 393 FunFam WD repeat-containing protein LWD1 1 316 - -
Lele03g0154 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 270 IPR001680 GO:0005515
Lele03g0154 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 187 IPR001680 GO:0005515
Lele03g0154 393 SMART WD40_4 229 269 IPR001680 GO:0005515
Lele03g0154 393 SMART WD40_4 42 87 IPR001680 GO:0005515
Lele03g0154 393 SMART WD40_4 140 178 IPR001680 GO:0005515
Lele03g0154 393 SMART WD40_4 95 137 IPR001680 GO:0005515
Lele03g0154 393 Pfam WD domain, G-beta repeat 233 268 IPR001680 GO:0005515
Lele03g0154 393 Pfam WD domain, G-beta repeat 147 178 IPR001680 GO:0005515
Lele03g0154 393 ProSitePatterns Trp-Asp (WD) repeats signature. 256 270 IPR019775 -
Lele03g0154 393 Gene3D - 4 320 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0154 Lele-ChrLele03 822306 824632 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0382 26 2307367 2310966 Lele03g0154 03 822306 824632 CCT
Lele27g1719 27 22492906 22495651 Lele03g0154 03 822306 824632 CCT
Lele28g0379 28 2316843 2320415 Lele03g0154 03 822306 824632 CCT
Lele25g0366 25 2236772 2245649 Lele03g0154 03 822306 824632 CCT
Lele03g0154 03 822306 824632 Lele03g0154 03 822306 824632 ECH
Lele01g0144 01 846922 847875 Lele03g0154 03 822306 824632 hybridization
Lele02g0149 02 831525 833793 Lele03g0154 03 822306 824632 hybridization