Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0144 ATGGCCTTCTCTTCCACCCTTTCTCCTGATTCTCCACATCAACGAATCGCCGTCGGTAGCTTCATTGAAGATTACAATAACCGCGTCGATATCGTCTCCTTCAACGCCGACTCTCCCTCCGTTCGACCCCAACCTTCCCTCTCTTTCGACCACCCCTACCCGCCTACTAAACTTATGTTCCACCCAAACTCCCCCTCTTCTCTTCGGAAGTCCTCCTCCGACCTCCTCGCCACTTCCGGTGATTATCTTCGCCTCTGGGAGGTTAATGAAAATTCCGTCGACACAATTTCACTCCTTAACAATAGCAAGACCAGCGAGTTCTGTGCCCCTTTGACCTCCTTCGATTGGAACGACATCGAACCCAAGAGAATTGGGACTTCCAGCATCGACACTACTTGTACTATTTGGGATATCGAAAAGGGGGTTGTCGAAACGCAGTTAATTGCGCACGATAAGGAGGTTTATGATATTTCCTGGGGTGAGGCTAGAGTGTTTGCCTCTGTTTCGGCGGATGGTTCTGTTAGAATCTTCGATCTGAGGGACAAGGAGCACTCCACGATTTTATACGAGAGTCCGCAGCCAGATACGCCTCTGCTGAGGTTGGCGTGGAATAAGCAGGATCTGAGGTACATGGCCACTATACTGATGGATAGCAATAAGATTGTGATATTGGATATTAGATCACCGACCATGCCGGTGGCGGAGTTGGAGAGGCATCGTGCTTGCGTGAATGCCATTGCTTGGGCTCCCCAGAGTAGCAGGCATATATGTTCGGCGGGGGATGATTCGCAGGCCCTTATCTGGGAATTGCCTACTGTGGCTGGACCTAATGGAATTGATGCCATGTCTATGTATTCTGCTGGCTCTGAAATTAATCAACTGCAGTGGTCTGCTGCGCAGCCTGACTGGATTGCTATTGCTTTTGCGAACAAGATGCAGCTTTTGAAGGTTTGA 954 0.4979 MAFSSTLSPDSPHQRIAVGSFIEDYNNRVDIVSFNADSPSVRPQPSLSFDHPYPPTKLMFHPNSPSSLRKSSSDLLATSGDYLRLWEVNENSVDTISLLNNSKTSEFCAPLTSFDWNDIEPKRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDISWGEARVFASVSADGSVRIFDLRDKEHSTILYESPQPDTPLLRLAWNKQDLRYMATILMDSNKIVILDIRSPTMPVAELERHRACVNAIAWAPQSSRHICSAGDDSQALIWELPTVAGPNGIDAMSMYSAGSEINQLQWSAAQPDWIAIAFANKMQLLKV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0144 317 Gene3D - 3 316 IPR015943 GO:0005515
Lele01g0144 317 SMART WD40_4 140 178 IPR001680 GO:0005515
Lele01g0144 317 SMART WD40_4 229 269 IPR001680 GO:0005515
Lele01g0144 317 SMART WD40_4 42 87 IPR001680 GO:0005515
Lele01g0144 317 SMART WD40_4 95 137 IPR001680 GO:0005515
Lele01g0144 317 SUPERFAMILY WD40 repeat-like 8 273 IPR036322 GO:0005515
Lele01g0144 317 FunFam WD repeat-containing protein LWD1 1 316 - -
Lele01g0144 317 Pfam WD domain, G-beta repeat 233 268 IPR001680 GO:0005515
Lele01g0144 317 Pfam WD domain, G-beta repeat 147 178 IPR001680 GO:0005515
Lele01g0144 317 PANTHER WD REPEAT CONTAINING PROTEIN 3 317 IPR045159 -
Lele01g0144 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 270 IPR001680 GO:0005515
Lele01g0144 317 ProSitePatterns Trp-Asp (WD) repeats signature. 256 270 IPR019775 -
Lele01g0144 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 187 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0144 Lele-ChrLele01 846922 847875 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0382 26 2307367 2310966 Lele01g0144 01 846922 847875 CCT
Lele27g1719 27 22492906 22495651 Lele01g0144 01 846922 847875 CCT
Lele28g0379 28 2316843 2320415 Lele01g0144 01 846922 847875 CCT
Lele25g0366 25 2236772 2245649 Lele01g0144 01 846922 847875 CCT
Lele01g0144 01 846922 847875 Lele01g0144 01 846922 847875 ECH
Lele01g0144 01 846922 847875 Lele03g0154 03 822306 824632 hybridization
Lele01g0144 01 846922 847875 Lele04g0146 04 829354 831637 hybridization