Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0146 ATGGATAACTCCACTCAAGAATCCCGCCTCAGATCCGAACACTCCGTTACCTATGATTCCCCTTATCCAATCTACGCCATGGCCTTCTCTTCCATCCCTTCTCTTGCTTCTCCACACCAACGAATCGCCGTTGGTAGCTTCATTGAAGATTACAATAACCGCGTCGATATCATCTCCTTCAACGCCGACTCTCCCTCCATTCGACCCCAACCTTCCCTCTCTTTCGACCACCCCTACCCTCCCACTAAACTTATGTTCCACCCAAACGCCCACTCTTCTCTTCGAAAGTCCTCCTCCGACCTCCTCGCCACTTCCGGCGACTATCTTCGCCTCTGGGAGGTTCGTGAAAATTCCGTCGACACAATTTCGCTTCTTAACAATAGCAAGACCAGCGAGTTCTGTGCCCCTTTGACCTCCTTCGATTGGAACGACATCGAACCCAAGAGAATTGGGACTTCCAGCATCGACACTACTTGTACTATTTGGGATATCGAAAAGGGGGTTGTCGAAACGCAGTTAATTGCGCACGATAAGGAGGTCTATGACATTGCTTGGGGCGAGGCTAGGGTATTTGCGTCTGTTTCGGCGGATGGTTCTGTTAGAATCTTCGATCTGAGGGACAAGGAGCATTCCACGATTATATACGAGAGTCCGCAGCCAGATACGCCTCTGCTCAGGTTGGCTTGGAATAAGCAGGACCTGAGGTACATGTCCACTATACTGATGGATAGCAATAAGATTGTGATATTGGATATTAGATCACCGACCATGCCGGTGGCGGAGTTGGAAAGGCATCGTGCTTGCGTGAATGCCATTGCTTGGGCTCCCCAGAGTAGTAGGCATATTTGTTCGGCGGGGGATGATTCGCAGGCCCTTATTTGGGAATTGCCTACTGTGGCTGGACCTAATGGAATTGATCCCATGTCTATGTATTCTGCTGGCTCTGAAATTAATCAACTGCAATGGTCTGCTGCTCAGCCTGACTGGATTGCTATTGCTTTTGCGAACAAGATGCAGCTTTTGAAGATAATTCCTAGTGCCTCCAGACTGTGCCGGTCCTCAGGCCATTTTGGGGATGCTTTTTTGGTGTTGTCGTCTACTTACGATTCCAGTAGTTTCTGTTCAGAGTTTGATTCATATGGTGATTCATATATGCTTTTCTCCTTAATCTGCTCAAGGTCACCTTCTGTAATTAAAGGCATTGTTATTGAACTTGGATATCCTCATGATGAGTTGGAAGATATCGACCCACTTGCATGA 1260 0.4794 MDNSTQESRLRSEHSVTYDSPYPIYAMAFSSIPSLASPHQRIAVGSFIEDYNNRVDIISFNADSPSIRPQPSLSFDHPYPPTKLMFHPNAHSSLRKSSSDLLATSGDYLRLWEVRENSVDTISLLNNSKTSEFCAPLTSFDWNDIEPKRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMSTILMDSNKIVILDIRSPTMPVAELERHRACVNAIAWAPQSSRHICSAGDDSQALIWELPTVAGPNGIDPMSMYSAGSEINQLQWSAAQPDWIAIAFANKMQLLKIIPSASRLCRSSGHFGDAFLVLSSTYDSSSFCSEFDSYGDSYMLFSLICSRSPSVIKGIVIELGYPHDELEDIDPLA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0146 419 Gene3D - 2 345 IPR015943 GO:0005515
Lele04g0146 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Lele04g0146 419 PANTHER WD REPEAT CONTAINING PROTEIN 5 342 IPR045159 -
Lele04g0146 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 296 IPR001680 GO:0005515
Lele04g0146 419 FunFam WD repeat-containing protein LWD1 11 342 - -
Lele04g0146 419 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Lele04g0146 419 SMART WD40_4 121 163 IPR001680 GO:0005515
Lele04g0146 419 SMART WD40_4 68 113 IPR001680 GO:0005515
Lele04g0146 419 SMART WD40_4 166 204 IPR001680 GO:0005515
Lele04g0146 419 SMART WD40_4 255 295 IPR001680 GO:0005515
Lele04g0146 419 SUPERFAMILY WD40 repeat-like 21 299 IPR036322 GO:0005515
Lele04g0146 419 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Lele04g0146 419 Pfam WD domain, G-beta repeat 259 294 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0146 Lele-ChrLele04 829354 831637 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0382 26 2307367 2310966 Lele04g0146 04 829354 831637 CCT
Lele27g1719 27 22492906 22495651 Lele04g0146 04 829354 831637 CCT
Lele28g0379 28 2316843 2320415 Lele04g0146 04 829354 831637 CCT
Lele25g0366 25 2236772 2245649 Lele04g0146 04 829354 831637 CCT
Lele04g0146 04 829354 831637 Lele04g0146 04 829354 831637 ECH
Lele01g0144 01 846922 847875 Lele04g0146 04 829354 831637 hybridization
Lele02g0149 02 831525 833793 Lele04g0146 04 829354 831637 hybridization