Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0260 ATGAGTGGTATTCCAACGTCAAAAGCAGAGCAGCGCAGGCTTCTTCTCATAAGTAAAACAACTGCAAAGCAGGTAGCAAGACGTATTCTTGAGTACGAACTGGTAGGCGACTTGTTGACTGCAGAAATTGAACTTCAAATGGCTACAGTTTGCTGGCCATATTTTGATCCTGAGTATGAGAACTTCAGCAACAGAATCAATCCTCCAAGGGTCTCTGTGGATAATGCTAGTTGCCATGATTGTACACTGATCAAGGTTGATAGTGTTAACAAACCTGGAATTCTGCTGGAACTGGTGCAAATTCTAGTAGACCTTGACTTCATAATCACCAAGGCTTACATATCTTCAGATGGTGGATGGTTTATGGATGTTTTTCATGTGACGGATCAGCAAGGAAAGAAGATAACCGACATCAAAACCATCGACTTCATAGAAAAGACTCTAGGACCCAAGGGCCAGAGCAAAGAAGGGGCAAAGAGTTGGCCTGCCAAAGGGGTTGGGGTGCACTCCATTGGTGATCACACAGCTATTGAGCTCATAGGCAGAGACCGCCCGGGTCTTTTGTCTGAGATCTCAGCTGTCCTTGCCAATCTCCAATTTAATGTTATTGCGGCTGAAGTTTGGACTCATAATAGACGTATAGCATGTGTTCTTTATGTCAACGATGCTACCGCCGGGGCTGTGGATAAGCCGAACAAACTATCTCTTATGGGGGAGCAGCTCAAACACATTTTACGTGGATGTGAGGATGATGAGAATGTGGCTCACACCAGTTTCTCAATGGGTTTCACCCATATGGATAGGAGACTCCACCAAATGTTGTTTGCGGATAGGGACTATGAATGTAGTGGAGTAACAGCTGAGATGGATTATCCTCCTTGTTTTAGACCCAAAATAACAATAGAACGTTGTGAGGAAAAAGGGTATTCAGTTGTTAGTGTCAATTGTAAAGATCGGGCAAAACTGATGTTTGACATTGTCTGCACTCTTACCGACATGCAATATGTTGTGTTTCATGCCAAAATCTCATCCGATGGCCCTTACGCATCCCAGGAGTACTTCATTCGGCACATGGATGGATGTACGCTTGATACTGAAGCAGAGGAAGAAAGGGTCATTAAATGCATTGAAGCTGCTATTCAAAGAAGAGTAAGCGAGGGTGTGAGCCTTGAGCTGTGTGCAAAGGATAGAGTGGGGTTGCTATCTGAAGTAACAAGGATTCTCCGGGAGAATGGCCTGATAGTTTGCAGGGCGGCCGTATCCACCATCGGAGAGCAAGGACTGAATGTGTTCTACGTGAGAGATGTTTCTGGAAATCCAGTGGACATGAAGATTGTGGAAGCACTTCGCAAAGAGATTGGGCAAAGCATGATGGTGAAGGTGAAGAGAGCACCAAGCAATGAGGAGGCGCGTGGGAGCAGAGGAGGGGCCAAAACAGGTTTCTTCTTCGGGAACTTGCTGGAAAGGTTGTTCTTGTCATGA 1482 0.4541 MSGIPTSKAEQRRLLLISKTTAKQVARRILEYELVGDLLTAEIELQMATVCWPYFDPEYENFSNRINPPRVSVDNASCHDCTLIKVDSVNKPGILLELVQILVDLDFIITKAYISSDGGWFMDVFHVTDQQGKKITDIKTIDFIEKTLGPKGQSKEGAKSWPAKGVGVHSIGDHTAIELIGRDRPGLLSEISAVLANLQFNVIAAEVWTHNRRIACVLYVNDATAGAVDKPNKLSLMGEQLKHILRGCEDDENVAHTSFSMGFTHMDRRLHQMLFADRDYECSGVTAEMDYPPCFRPKITIERCEEKGYSVVSVNCKDRAKLMFDIVCTLTDMQYVVFHAKISSDGPYASQEYFIRHMDGCTLDTEAEEERVIKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLIVCRAAVSTIGEQGLNVFYVRDVSGNPVDMKIVEALRKEIGQSMMVKVKRAPSNEEARGSRGGAKTGFFFGNLLERLFLS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0260 493 CDD ACT_ACR_1 81 152 - -
Lele03g0260 493 ProSiteProfiles ACT domain profile. 83 162 IPR002912 -
Lele03g0260 493 Gene3D - 384 467 - -
Lele03g0260 493 CDD ACT_ACR_3 309 383 - -
Lele03g0260 493 ProSiteProfiles ACT domain profile. 389 466 IPR002912 -
Lele03g0260 493 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 52 462 IPR040217 -
Lele03g0260 493 ProSiteProfiles ACT domain profile. 176 256 IPR002912 -
Lele03g0260 493 Pfam ACT domain 389 452 IPR002912 -
Lele03g0260 493 Pfam ACT domain 176 212 IPR002912 -
Lele03g0260 493 SUPERFAMILY ACT-like 385 454 IPR045865 -
Lele03g0260 493 Gene3D - 174 246 - -
Lele03g0260 493 CDD ACT_ACR_4 387 458 - -
Lele03g0260 493 SUPERFAMILY ACT-like 78 150 IPR045865 -
Lele03g0260 493 SUPERFAMILY ACT-like 171 222 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0260 Lele-ChrLele03 1427040 1432743 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0233 26 1350060 1355688 Lele03g0260 03 1427040 1432743 CCT
Lele28g0239 28 1408494 1410614 Lele03g0260 03 1427040 1432743 CCT
Lele03g0260 03 1427040 1432743 Lele03g0260 03 1427040 1432743 ECH
Lele01g0254 01 1443459 1449802 Lele03g0260 03 1427040 1432743 hybridization
Lele02g0245 02 1396053 1399266 Lele03g0260 03 1427040 1432743 hybridization