Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0254 ATGGTATCCGTGTACTCTGTCCTGCCATCTACAATTCAAACTCTTCTGAGATTAATCCGTTGGAATCCTGCAGGAACTTTTCACCGTTGGTTGCTTCCATTAAGCAATTTTTGTCCACTAAATAAAACAACTGCAAAGCAGGTAGCAAGACTTATTCTTAAGTACACACTGCTAGGTTCGGAAATTGAACTTCAAATGGCTACAGTTTGCTGGCCATATTTTGATCCTGAGTATGAGAACTTCAGCAACAGAATCAATCCTCCAAGGGTCTCTGTGGATAATGCTAGTTGCCATGATTGTACACTGATCAAGGTTGATAGTGTTAACAAGCCTGGAATTCTACTGGAACTGGTGCAAATACTAGCAGACCTGGACTTCATAATCACCAAGGCTTACATATCTTCAGATGGTGGATGGTTTATGGATGTTTTTCATGTGACGGATCAGCAAGGAAAGAAGATAACCGACATCAAAACCATCGACTTCATAGAAAAGGCTCTAGGACCCAAGGGCCAGAGCAAAGAAGGGGCAAAGAGTTGGCCTGCCAAAGGGGTTGGGGTGCACTCCATTGGTGATCACACAGCTATTGAGCTCATAGGTAGAGACCGCCCGGGTCTTTTGTCTGAGATCTCAGCTGTCCTCGCCAATCTCCAATTTAATGTGATTGCGGCTGAAGTTTGGACTCATAATAGACGTATAGCATGTGTTCTTTATGTCAACGATGCTACCGCCGGGGTTGTCGATGACCCGAACAAACTATCTCTTATGGAGGAGCAGCTCAAACACATTTTACGTGGATGTGACGATGAGAAAGTGGCTCACACCAGTTTCTCAATGGGTTTCACCCATATGGATAGGAGACTCCACCAAATGTTGTTTGCAGATAGGGACTATGAATGTAGTGGAGTAACAGCTGAGATGGATTATCCTCCTTGTTTTAGACCCAAAATAACAATAGAACGTTGTGAGGAAAAAGGGTATTCAGTTGTTAGTGTCAGTTGTAAAGATCGGGCAAAACTGATGTTTGACATTGTCTGCACTCTTACCGACATGCAATATGTTGTGTTTCATGCCACAATCTCATCCGATGGCCCTTACGCATCCCAGGAGTACTTCATTCGGCACATGGATGGATGTACGCTTGATACTGAAGCAGAGGAAGAAAGGGTCGTTAAATGCATTGAAGCTGCTATTCAAAGAAGAGTAAGCGAGGGTGTGAGCCTTGAGCTTTGTGCAAAGGATAGAGTGGGGTTGCTATCTGAAGTAACAAGGATTCTCCGGGAGAATGGCCTGACAGTTTGCAGGGCGGCCGTATCCACCATTGGAGAGCAAGGACTGAATGTGTTCTACGTGAGAGATGTTTCTGGAAATCCAGTGGACGTGAAGATTGTGGAAGCACTTCACAAAGAGATTGGGCAGAGCATGATGGTAAAGGTGAAGAGAGCACCAAGCAATGCGGAGGCGCGTGAGAGCAGAGGAGGGGTCAAAACAGGTTTCTTCTTCGGGAACTTGCTGGAAAGGTTGTTCTTGTCTTGA 1536 0.4505 MVSVYSVLPSTIQTLLRLIRWNPAGTFHRWLLPLSNFCPLNKTTAKQVARLILKYTLLGSEIELQMATVCWPYFDPEYENFSNRINPPRVSVDNASCHDCTLIKVDSVNKPGILLELVQILADLDFIITKAYISSDGGWFMDVFHVTDQQGKKITDIKTIDFIEKALGPKGQSKEGAKSWPAKGVGVHSIGDHTAIELIGRDRPGLLSEISAVLANLQFNVIAAEVWTHNRRIACVLYVNDATAGVVDDPNKLSLMEEQLKHILRGCDDEKVAHTSFSMGFTHMDRRLHQMLFADRDYECSGVTAEMDYPPCFRPKITIERCEEKGYSVVSVSCKDRAKLMFDIVCTLTDMQYVVFHATISSDGPYASQEYFIRHMDGCTLDTEAEEERVVKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVCRAAVSTIGEQGLNVFYVRDVSGNPVDVKIVEALHKEIGQSMMVKVKRAPSNAEARESRGGVKTGFFFGNLLERLFLS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0254 511 CDD ACT_ACR_4 405 476 - -
Lele01g0254 511 SUPERFAMILY ACT-like 97 170 IPR045865 -
Lele01g0254 511 CDD ACT_ACR_3 327 401 - -
Lele01g0254 511 SUPERFAMILY ACT-like 403 471 IPR045865 -
Lele01g0254 511 ProSiteProfiles ACT domain profile. 102 181 IPR002912 -
Lele01g0254 511 Gene3D - 193 266 - -
Lele01g0254 511 ProSiteProfiles ACT domain profile. 195 274 IPR002912 -
Lele01g0254 511 ProSiteProfiles ACT domain profile. 407 484 IPR002912 -
Lele01g0254 511 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 71 480 IPR040217 -
Lele01g0254 511 CDD ACT_ACR_1 100 171 - -
Lele01g0254 511 Pfam ACT domain 195 261 IPR002912 -
Lele01g0254 511 Pfam ACT domain 102 150 IPR002912 -
Lele01g0254 511 Pfam ACT domain 407 471 IPR002912 -
Lele01g0254 511 Gene3D - 402 485 - -
Lele01g0254 511 SUPERFAMILY ACT-like 190 266 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0254 Lele-ChrLele01 1443459 1449802 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0233 26 1350060 1355688 Lele01g0254 01 1443459 1449802 CCT
Lele28g0239 28 1408494 1410614 Lele01g0254 01 1443459 1449802 CCT
Lele01g0254 01 1443459 1449802 Lele01g0254 01 1443459 1449802 ECH
Lele01g0254 01 1443459 1449802 Lele03g0260 03 1427040 1432743 hybridization
Lele01g0254 01 1443459 1449802 Lele04g0251 04 1497699 1500763 hybridization