Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1957 ATGGGCAGCATTTGTGAGGTTGAGGCACGGCGAGGAGGTGGTTATGAGAGGATCCGTTTGCCTCCACTTGATATTCCATCACGAATCGGGTTTCAGAGAATCTGCATCTGGGAGTGGGAATCAAACCCCCCTAAGTTGCACGAAAACGAAAAGTCATCTTTTTCTCCCACTCCTGCTTTTGCCTTTTTCTTAGAACCACGAAACTTGTTATTCAAGCATCTCCTCTCCACACCACTCGCCGTATCCTCCATGGAGCTCAACGGCACGCCGGCTTCTCTTGGCTTTCATATGCCTGCAGAGTGGGAACCCCATTCTCACTGTTGGATTGGTTGGCCTGAACGCCCGGATAATTGGAGAGACAATGCTGTTCACTCCCAACATGTATTTGCCAGGGTAGCATCTGCAATCTCGAAGTTTGAGCCTGTGACTGTTTGTGCAAGTTCTGCTCAGTGGAAGAATGCACGAAGTCTGCTGCCTTCAAATATCCGGGTCGCTGAGATGAGCTTCAATGATTCTTGGTTTCGTGACACTGGGCCCACTTTTATTGTGAGCAGAAATCCCTCAAAGTCTGATACAGAGCCGAAGGTCGCAGGAATTGATTGGGATTTTAACAGCTGGGGAGGTTTAGATGGTGGTTGTTACAGTGACTGGAATCTTGACCTCCTAGTTGCAAAGAAGATTCTGGAAATTGAGACGATTCCTAGATTTCCCCAAACAATTGTGCTTGAAGGTGGAAGCATCCATGTAGATGGAGAAGGGACTTGTCTTACAACTGAGGAATGTCTCTTGAACAAAAACCGGAATCGAAGCTTGAGTAAAATCCAGATAGAGGATGAACTCAAAGCATATCTGGGAGTCAGAAAGATTATATGGTTGCCTCGTGGACTGTATGGGGATGATGATACTAATGGTCATATCGACAACATGTGCTGTTTTGCAAGGCCTGGTATGGTTCTTTTGTCTTGGACTGATGATGAAACTGATCCGCAGTATGAAAGATCTGTAGAGGCATATTCTTTGCTTTCAAGTGTAACCGATGCCAATGGTAGAAAACTTGAAATAATTAAACTCTATATACCTGGTCCACTCTATATGACGGAGGAAGAGGCTGCTGGGCTCATTCAGGATGGCGATGGCAAACCCAGACTTCCAGGTACAAGACTTGCTGCTAGTTATGTAAACTTCTATATTGCAAACGGAGCTCTCATTGTTCCACAGTTTGGAGATAAAAAGAGAGACGAAGAAGCTCTGCAAGTCCTATCTAAGGCCTTTACTCATCACGAAGTTGTGGGAATCGAAGGTGCGAGGGAGATTGTTTTGGGGGGTGGAAATATACACTGCATTACTCAGCAGCAACCAGCCATCAAGACAGCAGTCTGA 1380 0.4587 MGSICEVEARRGGGYERIRLPPLDIPSRIGFQRICIWEWESNPPKLHENEKSSFSPTPAFAFFLEPRNLLFKHLLSTPLAVSSMELNGTPASLGFHMPAEWEPHSHCWIGWPERPDNWRDNAVHSQHVFARVASAISKFEPVTVCASSAQWKNARSLLPSNIRVAEMSFNDSWFRDTGPTFIVSRNPSKSDTEPKVAGIDWDFNSWGGLDGGCYSDWNLDLLVAKKILEIETIPRFPQTIVLEGGSIHVDGEGTCLTTEECLLNKNRNRSLSKIQIEDELKAYLGVRKIIWLPRGLYGDDDTNGHIDNMCCFARPGMVLLSWTDDETDPQYERSVEAYSLLSSVTDANGRKLEIIKLYIPGPLYMTEEEAAGLIQDGDGKPRLPGTRLAASYVNFYIANGALIVPQFGDKKRDEEALQVLSKAFTHHEVVGIEGAREIVLGGGNIHCITQQQPAIKTAV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1957 459 Hamap Agmatine deiminase [aguA]. 88 454 IPR017754 GO:0009446|GO:0047632
Lele22g1957 459 Gene3D - 84 458 - -
Lele22g1957 459 Pfam Porphyromonas-type peptidyl-arginine deiminase 96 453 IPR007466 GO:0004668|GO:0009446
Lele22g1957 459 TIGRFAM agmatine_aguA: agmatine deiminase 89 454 IPR017754 GO:0009446|GO:0047632
Lele22g1957 459 SUPERFAMILY Pentein 85 454 - -
Lele22g1957 459 PANTHER AGMATINE DEIMINASE-RELATED 84 455 IPR007466 GO:0004668|GO:0009446
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1957 Lele-ChrLele22 24217579 24224227 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1957 22 24217579 24224227 Lele17g0864 17 19939496 19944952 CCT
Lele22g1957 22 24217579 24224227 Lele18g0662 18 3978157 3983153 CCT
Lele22g1957 22 24217579 24224227 Lele19g0701 19 4062314 4067744 CCT
Lele22g1957 22 24217579 24224227 Lele20g0755 20 14508531 14513805 CCT
Lele22g1957 22 24217579 24224227 Lele22g1957 22 24217579 24224227 ECH
Lele22g1957 22 24217579 24224227 Lele23g0022 23 124970 130920 hybridization
Lele22g1957 22 24217579 24224227 Lele24g1909 24 23796691 23800198 hybridization