Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0701 ATGTCGAAGCTGCTTCTCCACAGCTCTCATCTCAGCTCCGTTCACCGATGCATCGCCTTCCTTGCCCCTCCCTTCTCGGCTTCTATTGCCTCCGTTTCTCGCCTCCATTTTCGAAGCCGCTCCTCCGTTTTGATTTCTTCTGAATCGCATCTTCAAAGTATCTCTCCCTTTCAGTCCCGTAGAGACCTATCAGTTTGTGCTTTCGATTCTTCATCATCAGAGACTAAAGACCTGGATGAAGAAGCTGTCGGGAAGGGTGGAACCGATAATCTGTTTGTTAATACTGCTGATGAGGATTATCCCACCGGGGAATTTGAATTTGAACCCATTACGGGGTGGGGAGGTTTTCTAGTGAAGCTTAAGATGCTGGTTGCCTTCCCTTGGGAGCGTGTTCGCAAGGGCAGCGTCCTCACAATGAAGTTGCGCGGCCAGATATCCGATCAAATAAAGAGTAGATTCTCTCGGGGATTATCTCTACCTCAGATTTGTGAGAACTTTCTGAAAGCAGCATATGATCCTCGTATTTCTGGGGTCTATCTCCATATTGATATTTTGAGTTGTGGTTGGGGTAAAGTAGAAGAAATTCGAAGGCACATACTGAACTTCAAACAGTCAGGAAAATTTGTCGTGGCGTATGTCCCTTCATGTCAGGAAAAAGAATACTACCTTGCTTGTGCTTGTGATGAGATATACGCCCCTCCAAGTGCCTATTTTTCTTTGTTTGGCTTGACTGTTCAAGCTTCATTCCTCAGGGGTGTTTTAGATAACATAGGAATTGAACCACAAGTGGAAAGGATTGGCAAATACAAAAGCGCTGGGGATCAACTGGCTCGCAGAACCATATCTGAGGCAAACAGTGAGATGCTGACTGCATTGCTTGATAATATCTACACAAATTGGCTGGATAAAGTTTCCTCTGCAAAAGGAAAAAAAAGAGAAGATATTGAGAACTTTATAAACGAAGGAGTCTATAAAGTAGACAAGCTGAAAGAAGATGGCTTCATAACTAACATAATCTATGATGATGAGGTTATTTCCATGTTGAAAGAGAGACTTGGAGTGGCAACAGATAAAGATCTTCCTATGGTGGATTACAGAAAGTATTCCAGAGTTAGGAAATGGACCGTTGGAATATCAGGTGGTAAAGACTTAATAGCTCTCATCCGAGCCTCTGGGAGTATTAGCCGTATTGAGGGTCCATTAAGTTTGTCTGGCTCAGGGATTGTTGGAGAGAAGTTTATTGAGAAGATTCGCAGTGTCAGAGAGTCCAAAAAATATAAGGCTGCTATTATCCGAATTGACAGTCCTGGAGGTGATGCTCTTGCGTCTGATCTGATGTGGAGGGAAATCAGACTTTTGGCTGCTTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGCGGAGGATATTATATGGCAATGGCAGCAGGAACTATTGTTGCTGAAAGCCTTACTTTAACCGGTTCAATTGGAGTGGTTACAGGAAAATTCAACCTGGGTAAACTGTACGAGAAGATTGGATTTAATAAAGAAATCATATCAAGGGGAAGATATGCTGAGCTACTTGCGGCAGAACAACGCCCTTTTAGACCGGATGAAGCCGAGTTATTTGCCAAGTCTGCACAGAATGCTTACAAGCAATTTCGAGATAAGGCAGCATTTTCCAGATCCATGACTGTAGATAAGATGGAGGGGGTTGCACAGGGGAGAGTTTGGACCGGTAAAGACGCAGCCGCGCATGGTTTAGTTGACGCTATCGGTGGCCTTTCTCGTGCAATTGCCATAGCAAAATCGAAGGCAGACATACCCGAAGACAAACAGGTTACGATTGTGGAGGTCTCAAGAACAAGCCCTTCGCTACCAGAGATTTTGAGTGGCATTGGGAGTACCCTGGCCGGAGTAGACAGGACAATGAAGGAACTGTTACAAAGCTTGACACTTTCCGATAGGGTTCAAGCCCGGATGGATGGGATCATGTTTGAGAGATTGGAAGGTTATCCATACGCCAATCCCATATTGACATTGATAAAAGATTACCTTAGTTCCCTGTAG 2058 0.4431 MSKLLLHSSHLSSVHRCIAFLAPPFSASIASVSRLHFRSRSSVLISSESHLQSISPFQSRRDLSVCAFDSSSSETKDLDEEAVGKGGTDNLFVNTADEDYPTGEFEFEPITGWGGFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQIKSRFSRGLSLPQICENFLKAAYDPRISGVYLHIDILSCGWGKVEEIRRHILNFKQSGKFVVAYVPSCQEKEYYLACACDEIYAPPSAYFSLFGLTVQASFLRGVLDNIGIEPQVERIGKYKSAGDQLARRTISEANSEMLTALLDNIYTNWLDKVSSAKGKKREDIENFINEGVYKVDKLKEDGFITNIIYDDEVISMLKERLGVATDKDLPMVDYRKYSRVRKWTVGISGGKDLIALIRASGSISRIEGPLSLSGSGIVGEKFIEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMAAGTIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELLAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMTVDKMEGVAQGRVWTGKDAAAHGLVDAIGGLSRAIAIAKSKADIPEDKQVTIVEVSRTSPSLPEILSGIGSTLAGVDRTMKELLQSLTLSDRVQARMDGIMFERLEGYPYANPILTLIKDYLSSL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0701 685 CDD S49_SppA_67K_type 137 350 - -
Lele19g0701 685 CDD S49_Sppa_N_C 385 599 IPR002142 GO:0006508|GO:0008233
Lele19g0701 685 SUPERFAMILY ClpP/crotonase 385 590 IPR029045 -
Lele19g0701 685 SUPERFAMILY ClpP/crotonase 126 343 IPR029045 -
Lele19g0701 685 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 389 599 IPR004635 GO:0006508|GO:0008233
Lele19g0701 685 Pfam Peptidase family S49 453 603 IPR002142 GO:0006508|GO:0008233
Lele19g0701 685 Pfam Peptidase family S49 202 354 IPR002142 GO:0006508|GO:0008233
Lele19g0701 685 PANTHER PROTEASE 4 94 684 - -
Lele19g0701 685 Gene3D - 380 529 - -
Lele19g0701 685 Gene3D - 530 657 - -
Lele19g0701 685 Gene3D - 134 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0701 Lele-ChrLele19 4062314 4067744 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1990 21 26839569 26844660 Lele19g0701 19 4062314 4067744 CCT
Lele22g1957 22 24217579 24224227 Lele19g0701 19 4062314 4067744 CCT
Lele23g0022 23 124970 130920 Lele19g0701 19 4062314 4067744 CCT
Lele24g1909 24 23796691 23800198 Lele19g0701 19 4062314 4067744 CCT
Lele17g0864 17 19939496 19944952 Lele19g0701 19 4062314 4067744 hybridization
Lele18g0662 18 3978157 3983153 Lele19g0701 19 4062314 4067744 hybridization