Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1769 ATGTCATCGACGACGAGAGATCACGGGATCTTTAGCCGCATGGCGAGCCTTCCTCGGAGCATTATGGGAGAATTTTCAAGGGCCATGAGTGATATAGGATCAGGAAGAAGAAGAAGACGATCAAGAGCTCAAGATGAACTCCTCGCTCCTTCATCTTCAGATTTCCAATTCCAGCCATTTCCGCCGTTGGATCCGCCGCCGCCGCCTGTAGTTCGGGAGGATCAGTGGGCCTTTCTGGAGAGTTTTGAGCTTCAATACGGCACCGTACACCCTTTCTTCTACGCGTGCCGTTTAATGGAAGTTCTAAAACTTGCAGAGCAAGACAAGAAGTTGGTGTTCATGTACATCCATTCTCCAGAACACCCTTTCACGCACAGTTTCTGCAGGGAAACACTCTGTGGTGAGCTCGTGACTGAGTTTCTTGACGTTAACTTTATCTGCTGGGGAGGTCTCGCTGATCGAGGCGAAGGTCTGCGTATGGTCGCCAATCTCCGCCCCGCTAGCTTTCCCCTTTGCGCCGTCGTCGCCCCTGCCGCCGGTGACACCATGGCGGTTCTGCAACAGGTGGAAGGACCGGTTTCAGCGGCGGAGCTAGTGGAGGTTTTACAGAGAACAATGGAAGAGCAAGGATTGGCTTTTGGGAGTGACAGAGCTCGGCGGGAAGAAATGATCAGAGCTGATCGTCGGCTAAGAGAAGAACAAGACGCTGCATATCTTGAAGCTTTGCGAATTGACAGGGAAAAAGAAAACCTTAGGAATCCAACTTCAACAGAGAGAGTTCAGAAACCAGTACAAGCATTGAACACCAGAAATTATGAGAAGCCTAATAAGAACAAATATGTGAGCAAACACAGCTCTAAAGTGAATGAACCCACCACGGCTACGCAAAATCAAAACAAAGGAGTTCCAAATAGGGCTGGCCAGGCTCAACCCACTCAGATATTGATAAGGTTTCCAAATGGGGAAAGAAGAGAGCAGAGATTTGAGAGTACGGACAAAATCCAGGCAATTTTCGCATTCATTGATTCATTGGGCATGCCTGGTATTGGGAACTATAAATTGGTGTCAAACTTCCCAAGAAGAGTGTATGGCGTTGATCAGATGCGGATGACCCTCAAAGACGCGGGCCTCCATCCCAAAGCGAGCCTTTTCCTCGAGCCCGGACCTGTGCTTGTGGTGGTAGGATCAAAGCATGTTCCCTTAGTAAGTCTGGAAGTTGAAGTAATTACTGTCAATTGCATTGTATTCTACTTCAAAAGCTTTGTTAATGACTGGATAAACTTTAGATATGATGATGAGAAGCTGTGTGTCTTCTTAATTGAGAGGGCATTGAGTAGGCTTCCAACCGGTAAAGAACAGATACTTGGACTAGTTGACCTCAGGGGTTTCAGAACAGAGAATGCAGATCTGAAATTCTTGACCTTCTTGGTAAGATTTTCTAACCAGCTGCTGAAGAGCAGCCTGTATTTCATCATTCAATATATGCCTGTGGGCTGTGATCCATGTGCTGGTCTAAGCCTACTGAAAGCATTGTGTTTGGCTTTATTTCATGTAAAACAGTATAAGGCGATTTAA 1575 0.4686 MSSTTRDHGIFSRMASLPRSIMGEFSRAMSDIGSGRRRRRSRAQDELLAPSSSDFQFQPFPPLDPPPPPVVREDQWAFLESFELQYGTVHPFFYACRLMEVLKLAEQDKKLVFMYIHSPEHPFTHSFCRETLCGELVTEFLDVNFICWGGLADRGEGLRMVANLRPASFPLCAVVAPAAGDTMAVLQQVEGPVSAAELVEVLQRTMEEQGLAFGSDRARREEMIRADRRLREEQDAAYLEALRIDREKENLRNPTSTERVQKPVQALNTRNYEKPNKNKYVSKHSSKVNEPTTATQNQNKGVPNRAGQAQPTQILIRFPNGERREQRFESTDKIQAIFAFIDSLGMPGIGNYKLVSNFPRRVYGVDQMRMTLKDAGLHPKASLFLEPGPVLVVVGSKHVPLVSLEVEVITVNCIVFYFKSFVNDWINFRYDDEKLCVFLIERALSRLPTGKEQILGLVDLRGFRTENADLKFLTFLVRFSNQLLKSSLYFIIQYMPVGCDPCAGLSLLKALCLALFHVKQYKAI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1769 524 ProSiteProfiles UBX domain profile. 307 385 IPR001012 GO:0005515
Lele21g1769 524 Pfam UBX domain 310 386 IPR001012 GO:0005515
Lele21g1769 524 PANTHER FAS-ASSOCIATED PROTEIN 9 386 - -
Lele21g1769 524 CDD UBX 314 386 - -
Lele21g1769 524 SMART ubx_3 302 387 IPR001012 GO:0005515
Lele21g1769 524 SMART 45neu3 77 203 IPR006577 -
Lele21g1769 524 MobiDBLite consensus disorder prediction 285 312 - -
Lele21g1769 524 SUPERFAMILY Ubiquitin-like 305 387 IPR029071 -
Lele21g1769 524 MobiDBLite consensus disorder prediction 273 312 - -
Lele21g1769 524 CDD UAS 98 208 - -
Lele21g1769 524 SUPERFAMILY Thioredoxin-like 73 211 IPR036249 -
Lele21g1769 524 Gene3D Glutaredoxin 70 211 - -
Lele21g1769 524 Gene3D - 311 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1769 Lele-ChrLele21 25403485 25407645 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1769 21 25403485 25407645 Lele17g1069 17 21205068 21207740 CCT
Lele21g1769 21 25403485 25407645 Lele18g0472 18 2763536 2766204 CCT
Lele21g1769 21 25403485 25407645 Lele19g0491 19 2790514 2793162 CCT
Lele21g1769 21 25403485 25407645 Lele20g0964 20 15729483 15732181 CCT
Lele21g1769 21 25403485 25407645 Lele21g1769 21 25403485 25407645 ECH
Lele21g1769 21 25403485 25407645 Lele23g0239 23 1639847 1641446 hybridization
Lele21g1769 21 25403485 25407645 Lele24g1710 24 22415833 22417221 hybridization