Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0491 ATGAAGGCGACAATAAGGTACTTAGCAGGAATCGCTGGCCCAAGTGGTTTTGGCTCAAATTCCACAGCTGAACAAGTCACCCAACACTGTTCTTCATTGCCTCCTTCTCATCTCACTGCTCTCATCACTGGTAATTCAAAACTTATCAGTTTTCTTTATGTGGATTCTGATGGATTAATGTTGCTCAAATTTACATCCGCTGAATTAGCCAATTCCGATGTTAAATTTCAAGCTCTTTCTCACTATATGTGTGGGGCGACTTCTGGTATTGGGGCTGAAACGGCGAGAGTGCTGGCGAAGAGAGGAGTGAGAGTGGTGATTGGTGCGAGGAACATGAAGAAGGCTAGAGAAGTGAGAGAGAATATCCTGAAAGAGAGTCCAAATGCTGATGTTATATTGCTTGAGATTGATCTCAGCTCTTTTGCTTCCGTTCAGCAATTTTGTTCTGAGTTCTTGGCTCTTCAACTTCCACTTAACATTCTCATAAACAATGCTGGGATATACTCTCAGAACTTGGAGTTCTCCGAAGAGAAAATTGAGACGACATTTGCTACAAATTACCTAGGACATTTTTTGTTAACGGAAATGCTATTGGAGAGAATGATAGAAACAGCAGACAAGACGGGCATTGAAGGAAGAATAATAAACTTCTATAATGGCACGCGTGCGTATGCTCAGTCAAAACTGTCCAGTATTTTGCATGCCAAGGAAATGGCTAAACAGCTAAAGGCAAGAAATGCAAGAGTAACTATCAATGTGGTCCATCCGGGCATTGTGAAGACTGCAATTATGAGAGCTCACAAGAGTCTCATTACAGATTCCTTGTTTTTCATCGCGTCCAAGTTACTGAAATCGACTTCTCAGGGTGCGGCAACGACATGTTATGTAGCGTTGAGCCCAGAAACAGAAGGAGTGAGTGGGAAATACTTCTTAGACTGCAATGAGAGTAACTGTTCAAGTTTAGCCAACGATGAATCTGAAGCTCTCAAGCTATGGAACAACACCCGTTCCTTCCTTCACAAACGATTACGTCAATCTCCAGCTTGA 1047 0.4241 MKATIRYLAGIAGPSGFGSNSTAEQVTQHCSSLPPSHLTALITGNSKLISFLYVDSDGLMLLKFTSAELANSDVKFQALSHYMCGATSGIGAETARVLAKRGVRVVIGARNMKKAREVRENILKESPNADVILLEIDLSSFASVQQFCSEFLALQLPLNILINNAGIYSQNLEFSEEKIETTFATNYLGHFLLTEMLLERMIETADKTGIEGRIINFYNGTRAYAQSKLSSILHAKEMAKQLKARNARVTINVVHPGIVKTAIMRAHKSLITDSLFFIASKLLKSTSQGAATTCYVALSPETEGVSGKYFLDCNESNCSSLANDESEALKLWNNTRSFLHKRLRQSPA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0491 348 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Lele19g0491 348 PRINTS Glucose/ribitol dehydrogenase family signature 80 97 IPR002347 -
Lele19g0491 348 PRINTS Glucose/ribitol dehydrogenase family signature 156 167 IPR002347 -
Lele19g0491 348 PRINTS Glucose/ribitol dehydrogenase family signature 247 264 IPR002347 -
Lele19g0491 348 Pfam short chain dehydrogenase 84 266 IPR002347 -
Lele19g0491 348 Gene3D - 82 343 - -
Lele19g0491 348 PANTHER RETINOL DEHYDROGENASE 14 335 - -
Lele19g0491 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 316 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0491 Lele-ChrLele19 2790514 2793162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0491 85 266 Acyl Lipid Metabolism Gene Families AT3G55290 31.122 1.50e-12 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1769 21 25403485 25407645 Lele19g0491 19 2790514 2793162 CCT
Lele22g1745 22 22763168 22763857 Lele19g0491 19 2790514 2793162 CCT
Lele23g0239 23 1639847 1641446 Lele19g0491 19 2790514 2793162 CCT
Lele24g1710 24 22415833 22417221 Lele19g0491 19 2790514 2793162 CCT
Lele17g1069 17 21205068 21207740 Lele19g0491 19 2790514 2793162 hybridization
Lele18g0472 18 2763536 2766204 Lele19g0491 19 2790514 2793162 hybridization