Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0964 ATGAAGGCCACAATAAGGTACTTGGCAGGAATCGCTGGTCCAAGTGGTTTTGGCTCTAATTCCACGGCTGAACAAGTCGCTCAACACTGTTCTTCATTGCCTCCTTCTCATCTCACTGTTCTCATTACTGGAGCGACTTCTGGTATTGGAGCTGAAACGGCGAGGGTGCTGGCGAAGAGAGGAGTGAGAGTGGTGATTGGTGCGAGGAACATGAAGAAGGCGAGAGAAGTGAGAGAGAATATCCTGAAAGAGAGTCCAAATGCTGAGGTTATATTGCTTGAGATTGATCTCAGTTCTTTTGCTTCCGTTCAGAGATTTTGTTCTGAGTTCTTGGCTCGACAACTTCCACTTAACATTCTCATAAACAATGCTGGGATATATTCTCAGAACTTGGAGTTCTCCGAAGAGAAAATCGAGATGACATTTGCAACAAATTACCTAGGGCATTTTTTGCTAACGGAAATACTATTGGAGAGAATGATAGAAACAGCAGAGAAGACGGGCATTGAAGGAAGAATAATAAACTTGTCTTCAGTGATCCATAGTTGGGTTAAGAGAGAAGATTTTCAATTCAAGGACATGATTAAAGGAAGAAACTATAACGGCACGCGTGCGTATGCTCAGTCAAAACTGTCCAGTATTTTGCATGCCAAGGAAATGGCCAAACAGCTAAAGGCAAGAAATGCAAGAGTAACTATCAATGTGGTCCATCCGGGCATTGTGAAGACTGCAATTATGAGAGCTCATAAGAATCTCATAACAGATACCTTGTTTTTCATGGCATCCAAGTTACTGAAATCGACTTCTCAGGGAGCAGCAACGACATGTTATGTTGCGTTGAGCCCAGAAACAGAAGGAGTGAGTGGGAAATACTTCTTAGACTGCAATGAGAGTAACTGTTCAAGTTTAGCCAATGACGACTCTGAAGCTCTCAAGCTATGGAACAACACTCGTTCTTTCCTTCACAAACGATTACGTCAATCTCCAGCTTGA 993 0.428 MKATIRYLAGIAGPSGFGSNSTAEQVAQHCSSLPPSHLTVLITGATSGIGAETARVLAKRGVRVVIGARNMKKAREVRENILKESPNAEVILLEIDLSSFASVQRFCSEFLARQLPLNILINNAGIYSQNLEFSEEKIEMTFATNYLGHFLLTEILLERMIETAEKTGIEGRIINLSSVIHSWVKREDFQFKDMIKGRNYNGTRAYAQSKLSSILHAKEMAKQLKARNARVTINVVHPGIVKTAIMRAHKNLITDTLFFMASKLLKSTSQGAATTCYVALSPETEGVSGKYFLDCNESNCSSLANDDSEALKLWNNTRSFLHKRLRQSPA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0964 330 PANTHER RETINOL DEHYDROGENASE 14 317 - -
Lele20g0964 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Lele20g0964 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Lele20g0964 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Lele20g0964 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Lele20g0964 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Lele20g0964 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Lele20g0964 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Lele20g0964 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Lele20g0964 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Lele20g0964 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
Lele20g0964 330 Gene3D - 34 325 - -
Lele20g0964 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0964 Lele-ChrLele20 15729483 15732181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0964 39 292 Acyl Lipid Metabolism Gene Families AT1G24360 27.820 5.45e-15 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1769 21 25403485 25407645 Lele20g0964 20 15729483 15732181 CCT
Lele22g1745 22 22763168 22763857 Lele20g0964 20 15729483 15732181 CCT
Lele23g0239 23 1639847 1641446 Lele20g0964 20 15729483 15732181 CCT
Lele24g1710 24 22415833 22417221 Lele20g0964 20 15729483 15732181 CCT
Lele17g1069 17 21205068 21207740 Lele20g0964 20 15729483 15732181 hybridization
Lele18g0472 18 2763536 2766204 Lele20g0964 20 15729483 15732181 hybridization