Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0239 ATGTCATCGACGACGAGGGATCACGGGATCTTTAGCCGGATGGCGAGCCTTCCTCGGAGCATTATGGGAGAATTTTCAAGGGTCATGAGTGATATAGGATCAGGAAGAAGAAGAAGACGATCAAGAGCTCAAAATGAACTCCTCTCTCCTTCATCTTCAGATTTCCAATTCCAGCCATTTCCGCCGTTGGATCCACCGCCGCCGCAGGTAGTTCGGGAGGATCAGTGGGCCTTTCTGGAGAGTTTTGAGCTTCAATACGGCACCGTACACCCTTTCTTCTACACGTGCCGTTTAATGGAAGTTCTGAGACTTGCAGAGCAAGACAAGAAGTTGGTGTTCCTGTATATCCATTCTCCAGAACACCCCTTCACGCACAGTTTCTGCAGGGAAACACTCTGTAGTGAGCTCGTGACTGAGTTTCTTGACGTTAACTTTATCTGCTGGGGAGGTCTCGCTGATCGAGGGGAAGGTCTGCGTATGGTCGCCAATCTCCGCCCCGCTAGCTTTCCCCTTTGCGCCGTCGTCGCCCCTGCCGCCGGTGACACCATGGCGGTTCTGCAACAGTTGGAAGGACCAGTTTCAGCGGCGGAGCTAGTGGAGGTTTTACAGAGAACAATGGAAGAGCAAGGATTGGCTTTTGGGAGTGAAAGAGCTCGGTGGGAAGAAATGATCAGAGCTGATCGTCGGCTAAGAGAAGAGCAGGACGCTGCATATCTTGAAGCTTTACGAATTGACAGGGGAAAAGAAAACCTGAGGAATTCAACTTCAACAGAAAGAGTTCAGAAACCAGTACAAGCATTGAGCCCCAGAAATTATGAGAAGCCTAACAAGAACAAATCTGTGAGCAAAGACAACTCTAAAGTGAATGAACCCACCACCGCTAGGCAAAATCAAAACAAAGGAGTTCCAAATCGGGCAGGCCAGTCTCAACCCACTCAGATATTGATAAGGTTTCCAAATGGGGAAAGAAGAGAGCAGAGATTTGAGAGTACTGACAAAATCCAGGCAATTTTCGCATTCATTGATTCATTGGGTATGCCTGGGATTGGGAACTACAAATTGGTGTCAAACTTCCCAAGAAGGGTATATGGCGTTGATCAGATGAGAATGACACTCAAAGATGCGGGCCTCCATCCCAAAGCGAGCCTTTTCCTCGAGCCCGGGTCCACTGACCCATAG 1179 0.4902 MSSTTRDHGIFSRMASLPRSIMGEFSRVMSDIGSGRRRRRSRAQNELLSPSSSDFQFQPFPPLDPPPPQVVREDQWAFLESFELQYGTVHPFFYTCRLMEVLRLAEQDKKLVFLYIHSPEHPFTHSFCRETLCSELVTEFLDVNFICWGGLADRGEGLRMVANLRPASFPLCAVVAPAAGDTMAVLQQLEGPVSAAELVEVLQRTMEEQGLAFGSERARWEEMIRADRRLREEQDAAYLEALRIDRGKENLRNSTSTERVQKPVQALSPRNYEKPNKNKSVSKDNSKVNEPTTARQNQNKGVPNRAGQSQPTQILIRFPNGERREQRFESTDKIQAIFAFIDSLGMPGIGNYKLVSNFPRRVYGVDQMRMTLKDAGLHPKASLFLEPGSTDP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0239 392 ProSiteProfiles UBX domain profile. 307 385 IPR001012 GO:0005515
Lele23g0239 392 CDD UBX 314 386 - -
Lele23g0239 392 Gene3D - 311 390 - -
Lele23g0239 392 PANTHER FAS-ASSOCIATED PROTEIN 9 386 - -
Lele23g0239 392 MobiDBLite consensus disorder prediction 250 329 - -
Lele23g0239 392 Gene3D Glutaredoxin 68 211 - -
Lele23g0239 392 CDD UAS 93 208 - -
Lele23g0239 392 SUPERFAMILY Thioredoxin-like 73 212 IPR036249 -
Lele23g0239 392 SMART ubx_3 302 387 IPR001012 GO:0005515
Lele23g0239 392 MobiDBLite consensus disorder prediction 32 61 - -
Lele23g0239 392 Pfam UBX domain 309 386 IPR001012 GO:0005515
Lele23g0239 392 SMART 45neu3 77 203 IPR006577 -
Lele23g0239 392 MobiDBLite consensus disorder prediction 285 316 - -
Lele23g0239 392 SUPERFAMILY Ubiquitin-like 305 387 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0239 Lele-ChrLele23 1639847 1641446 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0239 23 1639847 1641446 Lele17g1069 17 21205068 21207740 CCT
Lele23g0239 23 1639847 1641446 Lele18g0472 18 2763536 2766204 CCT
Lele23g0239 23 1639847 1641446 Lele19g0491 19 2790514 2793162 CCT
Lele23g0239 23 1639847 1641446 Lele20g0964 20 15729483 15732181 CCT
Lele23g0239 23 1639847 1641446 Lele23g0239 23 1639847 1641446 ECH
Lele21g1769 21 25403485 25407645 Lele23g0239 23 1639847 1641446 hybridization
Lele22g1745 22 22763168 22763857 Lele23g0239 23 1639847 1641446 hybridization