Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0472 ATGAAGGCCACAATAAGGTACTTGGCAGGAATCGCTGGCCCAAGTGGTTTTGGCTCTAATTCCACAGCTGAACAAGTCACTCAACACTGTTCTTCATTGCCTCCTTCTCATCTCACTGCTCTCATTACTGGGGCGACTTCTGGTATTGGAGCTGAAACGGCGAGGGTGATGGCGAAGAGAGGAGTGAGAGTGGTGATTGGTGCGAGGAACATGAAGAAGGCGAGAGAAGTGAGAGAGAATATCCTGAAAGAGAGTCCAAATGCTGAGGTTATATTGCTTGAGATTGATCTCAGTTCTTTTGCTTCCGTTCAGAGATTTTGTTCTGAGTTCTTGGCTCGACAACTTCCACTTAACATTCTCATAAACAATGCTGGGATATATTCTCAGAACTTGGAGTTCTCCGAAGAGAAAATCGAGATGACATTTGCAACAAATTACCTAGGACATTTTTTGTTAACGGAAATGCTATTGGAGAGAATGATAGAAACAGCAGAGAAGACGGGCATTGAAGGAAGAATAATAAACTTGTCTTCAGTGATCCATAGTTGGGTTAAAAGAGAAGATTTTCAATTCAAGGACATGATTAAAGGAAGAAACTATAATGGCACGCGTGCGTATGCTCAGTCAAAACTGTCCAGTATTTTGCTTGCCAAGGAAATGGCCAAACAGCTAAAGGCAAGAAATGCAAGAGTAACTATCAATGTGGTCCATCCGGGCATTGTGAAGACTGCAATTATGAGAGCTCATAAAAGTCTCATAACAGATACCTTGTTTTTCATGGCATCCAAGTTACTGAAATCGACTTCTCAGGGAGCAGCAACGACATGTTATGTTGCGTTGAGCCCAGAAACAGAAGGAGTGAGTGGGAAATACTTCTTAGACTGCAATGAGAGTAACTGTTCAAGTTTAGCCAATGACGAATCTGAAGCTCTCAAGCTATGGAACAACACTCGTTCTTTCCTTTACAAACGATTACGTCAATCTCCAGCTTGA 993 0.423 MKATIRYLAGIAGPSGFGSNSTAEQVTQHCSSLPPSHLTALITGATSGIGAETARVMAKRGVRVVIGARNMKKAREVRENILKESPNAEVILLEIDLSSFASVQRFCSEFLARQLPLNILINNAGIYSQNLEFSEEKIEMTFATNYLGHFLLTEMLLERMIETAEKTGIEGRIINLSSVIHSWVKREDFQFKDMIKGRNYNGTRAYAQSKLSSILLAKEMAKQLKARNARVTINVVHPGIVKTAIMRAHKSLITDTLFFMASKLLKSTSQGAATTCYVALSPETEGVSGKYFLDCNESNCSSLANDESEALKLWNNTRSFLYKRLRQSPA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0472 330 PANTHER RETINOL DEHYDROGENASE 14 317 - -
Lele18g0472 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Lele18g0472 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Lele18g0472 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Lele18g0472 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
Lele18g0472 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Lele18g0472 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Lele18g0472 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Lele18g0472 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Lele18g0472 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Lele18g0472 330 Gene3D - 34 325 - -
Lele18g0472 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Lele18g0472 330 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 193 221 IPR020904 GO:0016491
Lele18g0472 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0472 Lele-ChrLele18 2763536 2766204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0472 39 248 Acyl Lipid Metabolism Gene Families AT1G63380 29.032 3.02e-14 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1769 21 25403485 25407645 Lele18g0472 18 2763536 2766204 CCT
Lele22g1745 22 22763168 22763857 Lele18g0472 18 2763536 2766204 CCT
Lele23g0239 23 1639847 1641446 Lele18g0472 18 2763536 2766204 CCT
Lele24g1710 24 22415833 22417221 Lele18g0472 18 2763536 2766204 CCT
Lele18g0472 18 2763536 2766204 Lele19g0491 19 2790514 2793162 hybridization
Lele18g0472 18 2763536 2766204 Lele20g0964 20 15729483 15732181 hybridization