Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0948 ATGCAATCTTTAGGTTCTAAGGCTGTCGTGAATCTGCGTTTGCCTGGTCGCGGAGGGTCTGATTTCTGCGACACCGAGACCCGAGTAAGGAGGCAGTGGGTGAATTGCAGGACCCTGAAGAGAACGAATGGAATCGTAGCTTGTATTGCAGACAGGAATGAGAATGGCAGAGGAGAGAGCGGGAGTACGAGTCGAAGTGCGAGTCCGAGATCGTTTCTGTCTCGGAGCCACAAATATGCCCTCTTAAAGCAGCAAATGGAACTAGCTGCGAAATCTGAGGACTACAAGGAAGCTGCGAGGATTCGTGACTCCATTAAATCCTTTGAAGAGGAGGAGCCAGTTTTGCGTCTGAGGAGATTAATGAAAGAAGCAATTGCTGAGGAGAGGTTTACGGTATCTACTTGTCACCCGACCTTGTTGTTTGCATTACACTTTGGGGCTTATTGTGAAGGATATATTACAGAGAAGGCTATCTCATTCATTGTTCCTTTTCTTAATCAGCATATATGTCATCTTTCATTTCAAGCAAAATATCGTGATGAGCTTAGAGAAATTGGTCCACACTGTCTCTTAAAATGTTCAAGTAATGCGACAACCTTGGGAATCAGTGTTCAAGTTAGAAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGGGCTTTACTTTTTTGCATACAGAATCAGAATTACGAACAACTCTGACCGCCCTGTTCAACTTCTTAGAAGGCATTGGATTATAACGGATGCAAATGGGAAGACAGAAAACGTCTGGGGGATGGGGGTTGTTGGTGAACAGCCTGTAATACTTCCTAGGACTAGTTTTGAGTACTCTTCAGCATGTCCATTAAGCACACCAAATGGTAGAATGGAAGGTGACTTTGAGATGATAAATGTTGATAGAATAGGGTCACCAACATTTAACGTGGCTGTTGCTCCCTTCTCTATCTCTCTACTTGGAGATGATGATGGTCATCATATTTGA 984 0.438 MQSLGSKAVVNLRLPGRGGSDFCDTETRVRRQWVNCRTLKRTNGIVACIADRNENGRGESGSTSRSASPRSFLSRSHKYALLKQQMELAAKSEDYKEAARIRDSIKSFEEEEPVLRLRRLMKEAIAEERFTVSTCHPTLLFALHFGAYCEGYITEKAISFIVPFLNQHICHLSFQAKYRDELREIGPHCLLKCSSNATTLGISVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDRPVQLLRRHWIITDANGKTENVWGMGVVGEQPVILPRTSFEYSSACPLSTPNGRMEGDFEMINVDRIGSPTFNVAVAPFSISLLGDDDGHHI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0948 327 Pfam UvrB/uvrC motif 82 110 IPR001943 GO:0005515
Lele20g0948 327 Pfam ApaG domain 214 297 IPR007474 -
Lele20g0948 327 ProSiteProfiles ApaG domain profile. 196 323 IPR007474 -
Lele20g0948 327 SUPERFAMILY ApaG-like 198 317 IPR036767 -
Lele20g0948 327 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 79 110 IPR036876 -
Lele20g0948 327 Gene3D ApaG domain 192 326 IPR036767 -
Lele20g0948 327 ProSiteProfiles UVR domain profile. 76 111 IPR001943 GO:0005515
Lele20g0948 327 PANTHER OS05G0170800 PROTEIN 32 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0948 Lele-ChrLele20 15626662 15629172 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1784 21 25506762 25508024 Lele20g0948 20 15626662 15629172 CCT
Lele22g1760 22 22844634 22845757 Lele20g0948 20 15626662 15629172 CCT
Lele23g0224 23 1540501 1541755 Lele20g0948 20 15626662 15629172 CCT
Lele24g1721 24 22491658 22492577 Lele20g0948 20 15626662 15629172 CCT
Lele17g1050 17 21094059 21096334 Lele20g0948 20 15626662 15629172 hybridization
Lele18g0488 18 2878930 2881457 Lele20g0948 20 15626662 15629172 hybridization