Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0224 ATGCTAAGGCTCGCTTCCAAGAGACTTGTCGGAATCGCGTCGCGGCTGGCGCCGACGTCCCAGGCTCTGCCTCGGTTTTACCACGAGAGGGTTGTTGAGCACTACAACAATCCCCGGAATGTTGGATCCTTCAATAAGAATGACGCCGACGTTGGTACAGGCGTTGTCGGTGCACCTGCATGTGGGGATGTTATGAAGCTTCAGGTTAAGGTTGATGAAGAGACCGGTAAGATTACTGATGCTTGCTTCAAGACCTTCGGCTGTGGCTCCGCTATTGCCTCTTCCTCTCTAGCCACGGAATGGGTAAAGGGAAAGCAAGTGGAAGAAGCTCTATCCATTAAAAACTCTGAAATTGCGAAGCATCTTTCACTTCCGCCAGTTAAGCTTCACTGCAGCATGCTGGCTGAGGATGCCATTAAAGCAGCTGTGAAAGACTATGAAACTAAACGTGCTAATGGAAATGGTAGTGAAGGTTCAGCTTCTGGAGAGAAGGCCACCCCTGTTTGA 507 0.501 MLRLASKRLVGIASRLAPTSQALPRFYHERVVEHYNNPRNVGSFNKNDADVGTGVVGAPACGDVMKLQVKVDEETGKITDACFKTFGCGSAIASSSLATEWVKGKQVEEALSIKNSEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYETKRANGNGSEGSASGEKATPV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0224 168 Pfam NifU-like N terminal domain 27 151 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lele23g0224 168 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 16 157 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lele23g0224 168 FunFam Iron-sulfur cluster assembly scaffold protein IscU 25 153 - -
Lele23g0224 168 Gene3D - 26 166 - -
Lele23g0224 168 SUPERFAMILY SufE/NifU 26 151 - -
Lele23g0224 168 CDD IscU_like 27 142 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lele23g0224 168 TIGRFAM iscU: FeS cluster assembly scaffold IscU 27 150 IPR011339 GO:0005506|GO:0016226|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0224 Lele-ChrLele23 1540501 1541755 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0224 23 1540501 1541755 Lele17g1050 17 21094059 21096334 CCT
Lele23g0224 23 1540501 1541755 Lele18g0488 18 2878930 2881457 CCT
Lele23g0224 23 1540501 1541755 Lele19g0507 19 2905704 2908074 CCT
Lele23g0224 23 1540501 1541755 Lele20g0948 20 15626662 15629172 CCT
Lele21g1784 21 25506762 25508024 Lele23g0224 23 1540501 1541755 hybridization
Lele22g1760 22 22844634 22845757 Lele23g0224 23 1540501 1541755 hybridization