Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0488 ATGCAATCTTTAGGTTCTAAGGCTCTCCTGAATCTGCGTTTGCCGGGTCGCGGAGGGTCTGATTTCTGCGACACCGAGACCCGAGTAAGGAGGCAGTGGGTGAATTGCAGGAACCTGAAGAGAACGAATGGGATCGTAGCTTGTATTGCAGACAGGAATGATAATGGCAGAGGAGAGAGTCGGAGTATGAGTCGAAGTGCGAGTCCGAGCTCGTTTCTGTCTCGGAGCCACACATATGCCCTCTTAAAGCAGCAAATGGAGCTAGCTGCGAAATCTGAGGACTACAAGGAAGCTGCGAGGATTCGTGACTCCATTAAATCCTTTGAAGAGGAGGAGCCAGTTTTGCGTCTGCGGAGATTAATGAAAGAAGCAATTGCTGAGGAGAGGTTTACGGATGCAGCAAAATATCGTGATGAGCTTAGAGAAATTGGTCCACACGGTCTCTTAAAATGTTCAAGTAATGCAACAACCTTGGGAATCAGGGTACAAGTTAGAAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGGGCTTTACTTTTTTGCATACAGAATCAGAATTACGAACAACTCTGACCGCCCTGTTCAACTTCTTAGAAGGCATTGGATTATAACGGATGCAAATGGGAAGACAGAAAACGTCTGGGGGATGGGTGTTGTTGGTGAACAGCCTGTAATGCTTCCTAGGACTAGTTTTGAGTACTCTTCAGCATGTCCATTAAGCACACCAAATGGTAGAATGGAAGGTGACTTTGAGATGATAAATGTTGATAGAATAGGGTCACCATCATTTAACGTGGCTGTTGCTCCCTTCTCTCTCTCTCTACTTGGAGATGATGATGGTCATCATATTTGA 858 0.4557 MQSLGSKALLNLRLPGRGGSDFCDTETRVRRQWVNCRNLKRTNGIVACIADRNDNGRGESRSMSRSASPSSFLSRSHTYALLKQQMELAAKSEDYKEAARIRDSIKSFEEEEPVLRLRRLMKEAIAEERFTDAAKYRDELREIGPHGLLKCSSNATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDRPVQLLRRHWIITDANGKTENVWGMGVVGEQPVMLPRTSFEYSSACPLSTPNGRMEGDFEMINVDRIGSPSFNVAVAPFSLSLLGDDDGHHI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0488 285 ProSiteProfiles UVR domain profile. 76 111 IPR001943 GO:0005515
Lele18g0488 285 Gene3D ApaG domain 150 284 IPR036767 -
Lele18g0488 285 Pfam ApaG domain 172 255 IPR007474 -
Lele18g0488 285 Pfam UvrB/uvrC motif 82 110 IPR001943 GO:0005515
Lele18g0488 285 Pfam UvrB/uvrC motif 116 143 IPR001943 GO:0005515
Lele18g0488 285 ProSiteProfiles UVR domain profile. 111 146 IPR001943 GO:0005515
Lele18g0488 285 ProSiteProfiles ApaG domain profile. 154 281 IPR007474 -
Lele18g0488 285 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 78 110 IPR036876 -
Lele18g0488 285 SUPERFAMILY ApaG-like 156 275 IPR036767 -
Lele18g0488 285 PANTHER OS05G0170800 PROTEIN 32 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0488 Lele-ChrLele18 2878930 2881457 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1784 21 25506762 25508024 Lele18g0488 18 2878930 2881457 CCT
Lele22g1760 22 22844634 22845757 Lele18g0488 18 2878930 2881457 CCT
Lele23g0224 23 1540501 1541755 Lele18g0488 18 2878930 2881457 CCT
Lele24g1721 24 22491658 22492577 Lele18g0488 18 2878930 2881457 CCT
Lele18g0488 18 2878930 2881457 Lele19g0507 19 2905704 2908074 hybridization
Lele18g0488 18 2878930 2881457 Lele20g0948 20 15626662 15629172 hybridization