Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1255 ATGATCCCAACGCCCGCAGCGATGGCAGCCTCATCCACTTTCAGCAATTTTCTCTCGTTTATCTTACCCTCAAAACCGCCACCTCCCAAGACGCCTCCGCCTTCCCAATTGAATCTCCCTTCTTCTTCTTCTTCCTCTTCCTCTTCTACTCGCTTTTTCTCTCAGACTCACCACAACTCGCCCGACAGCTTCACTCCGCTTGTGGCTGAAGATGACGGAAAGCATAATTCTTGCTTATCGGCGGAGTTGTCCTCTGTGATATGCCCCTCTCTGGCTTATTCCAACACTCTCTTCTTCAAATCAGCCTACAACGTGCAGGTTATCGTTGGGGAGAACGAGCCCGAGGAGAGGCTCCTCAACAGGTTCCGTAGAGAGGTCATGAAGACCGGTCTCATTCAGGAATGCAAGCGCAGGAGGTTCTTCGAGAGTAAGCAGGACGAGGAGAAGCGCAAGACCCGTGAGGCTGCCAAGCGCAACCGTAGAAGGCCACGTTCATCAAGATTTTCAACAGAGAGTAAGCCGGAAGTCCCGACAACAACCAAGAAGGAAGAGGATAAAGATAACTGGGATCTGCCCGAAGAAGATACTCCATACTGA 597 0.5126 MIPTPAAMAASSTFSNFLSFILPSKPPPPKTPPPSQLNLPSSSSSSSSSTRFFSQTHHNSPDSFTPLVAEDDGKHNSCLSAELSSVICPSLAYSNTLFFKSAYNVQVIVGENEPEERLLNRFRREVMKTGLIQECKRRRFFESKQDEEKRKTREAAKRNRRRPRSSRFSTESKPEVPTTTKKEEDKDNWDLPEEDTPY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1255 198 MobiDBLite consensus disorder prediction 23 68 - -
Lele16g1255 198 Gene3D Ribosomal protein S8 119 157 IPR038380 -
Lele16g1255 198 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 8 198 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele16g1255 198 TIGRFAM S21p: ribosomal protein bS21 105 162 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele16g1255 198 PRINTS Ribosomal protein S21 family signature 140 150 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele16g1255 198 PRINTS Ribosomal protein S21 family signature 128 138 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele16g1255 198 PRINTS Ribosomal protein S21 family signature 108 116 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele16g1255 198 PRINTS Ribosomal protein S21 family signature 116 125 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele16g1255 198 Hamap 30S ribosomal protein S21 [rpsU]. 104 160 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele16g1255 198 MobiDBLite consensus disorder prediction 37 63 - -
Lele16g1255 198 Pfam Ribosomal protein S21 106 160 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele16g1255 198 MobiDBLite consensus disorder prediction 143 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1255 Lele-ChrLele16 7101490 7102661 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0398 06 2442468 2443643 Lele16g1255 16 7101490 7102661 CCT
Lele07g0604 07 3457193 3459047 Lele16g1255 16 7101490 7102661 CCT
Lele08g0404 08 2487627 2488811 Lele16g1255 16 7101490 7102661 CCT
Lele13g1235 13 22665596 22666739 Lele16g1255 16 7101490 7102661 hybridization
Lele14g1133 14 21003203 21004323 Lele16g1255 16 7101490 7102661 hybridization