Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0404 ATGACGATGATGAATAAGAAAACATTGCCTGTGTGGAGCACTGGAAGTGGTTTTCAGGCGAGCAAGACGAGAGCTATGGAGAACAGGGGAAGTGGTAATTCCTCAGGTGAAGAACCTCAGGATGCAGATTATGATATTATGCCGTCTCTGAGCGACGAGCTAGAGACACTGATCTTGGCCAGGCTTCCAAGATCTGAGCATTGGAAACTATGCTTTCTGAACAAGAGGCTTCAAGCCCTTGTAAAGACGGGTGAAATCATCAAAATCAGGAGAGAAATAGGGTTCAAAGAGCCCACTGTGTTCATGTTAGCAAGTGGAGAGACCAATTGGTGGGCCTTCGATGAACACTTGGAATCCTGCAGAATGCTCCCCTTTATCCCTTCAGACTACAATTTCACACACGGAGATAAGGAATCATTCTGTGCAGGTTCCCATTTGTTTGTTTCAGGCAGGGAATTCGATGGAGCTGCTATTTGGAAGTACGAGGTAGCAACAAACCAATGGTTGAAGGCTCCCTCCATGAACAATCCTAGGTGTCTGTTCGCATCAGCCAGCTCTGGTAACTATGCTTTCGTCGCAGGTGGTCAAGACACCAAGACTTATTCTCAGGTCTTGGACTCTGCTGAGAAATACAATTCAAAGAGAAAGTGTTGGGGATCCCTGCCTAGGATGAATCGGAAGAGAAAGTCTTGCTCGGGTTGTTATATGGACAAGAAATTCTATGTAATTGGGGGACAAGATGAGCAACAAAACGTCCTCACTTGTGGCGAATTCTTTGACGAGGAAACCAACACTTGGAACTTAATTCCCGACATGTTGAAAGACATTCCTGTGTCGGTTTCACGGTCCCCACCACTTGTTGCTGTCGCCAATAACCAGCTCTACGCGCTGGATGTTTCCTCCAACGAGCTGAAAACGTATCTGAAGCGAAGCAACTCGTGGAAGAAGCTAGGAACAGTTCCAGTGATGGCTAGTGCTCAAGGAGGTTGGGGTGTGGCCTTCAAGTCTCTGGGGAATGAGCTGTTCGTAATCGGTGCCACTGCTACGTCTTCTTCTAGGCGTGGCCTCACGATCTACACTTGTTGCCCTGATCCTTCCATTGAGGAGGTTCAATGGCGCCGAATTGAATGTGGCAACACCAAGCTCAGTCCATTCATTCACAATTGTGCTGTGAGGGTAGCTTGA 1185 0.4751 MTMMNKKTLPVWSTGSGFQASKTRAMENRGSGNSSGEEPQDADYDIMPSLSDELETLILARLPRSEHWKLCFLNKRLQALVKTGEIIKIRREIGFKEPTVFMLASGETNWWAFDEHLESCRMLPFIPSDYNFTHGDKESFCAGSHLFVSGREFDGAAIWKYEVATNQWLKAPSMNNPRCLFASASSGNYAFVAGGQDTKTYSQVLDSAEKYNSKRKCWGSLPRMNRKRKSCSGCYMDKKFYVIGGQDEQQNVLTCGEFFDEETNTWNLIPDMLKDIPVSVSRSPPLVAVANNQLYALDVSSNELKTYLKRSNSWKKLGTVPVMASAQGGWGVAFKSLGNELFVIGATATSSSRRGLTIYTCCPDPSIEEVQWRRIECGNTKLSPFIHNCAVRVA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0404 394 MobiDBLite consensus disorder prediction 1 45 - -
Lele08g0404 394 Gene3D - 97 383 IPR015915 GO:0005515
Lele08g0404 394 FunFam F-box/kelch-repeat protein SKIP11 92 377 - -
Lele08g0404 394 Pfam Kelch motif 228 272 IPR006652 GO:0005515
Lele08g0404 394 Pfam Kelch motif 177 225 IPR006652 GO:0005515
Lele08g0404 394 SMART kelc_smart 239 292 IPR006652 GO:0005515
Lele08g0404 394 SMART kelc_smart 189 238 IPR006652 GO:0005515
Lele08g0404 394 SMART kelc_smart 145 188 IPR006652 GO:0005515
Lele08g0404 394 MobiDBLite consensus disorder prediction 1 38 - -
Lele08g0404 394 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 42 391 - -
Lele08g0404 394 SUPERFAMILY Kelch motif 107 369 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0404 Lele-ChrLele08 2487627 2488811 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0404 08 2487627 2488811 Lele13g1235 13 22665596 22666739 CCT
Lele08g0404 08 2487627 2488811 Lele14g1133 14 21003203 21004323 CCT
Lele08g0404 08 2487627 2488811 Lele15g1223 15 7090721 7091864 CCT
Lele08g0404 08 2487627 2488811 Lele16g1255 16 7101490 7102661 CCT
Lele08g0404 08 2487627 2488811 Lele08g0404 08 2487627 2488811 ECH
Lele05g0577 05 3391939 3393954 Lele08g0404 08 2487627 2488811 hybridization
Lele06g0398 06 2442468 2443643 Lele08g0404 08 2487627 2488811 hybridization