Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1133 ATGGCAGCCTCATACTCTTTCCGCAATTTTCTCTCGTTTATCTTACCCTCGAAACCACCACCTCCCAAGACGCCTCCTCCTTCCCAATTGAATCTCCCTTCTTCTTCCTCTTGCTCTTCTACTAGCTTTTCCTCTCAGACTCACCACAAGTCGCCCGACAGCTTCACTCCGCTTGTGGCTGAAGATGACGGAAAGCACAATTCTTGCTTATCGGCGGAGTTATCCTCTGTCATATGCCCCTCTCTGGCTTATTCCAACACTCTCTTCTTCAAATCAGCCTACAATGTGCAGGTTATCGTTGGGGAGAACGAGCCCGAGGAGAGGCTCCTCAACAGGTTCCGTAGAGAGGTCATGAAGACCGGTCTCATTCAGGAATGCAAGCGCAGGAGGTTCTTCGAGAGTAAGCAAGCCGAGGAGAAGCGCAAGACCCGTGAGGCTGCCAAGCGCAACCGTAGAAGGCCACGTTCATCAAGATTTTCAACAGAGAGTAAGCCGGAAGTCCCGATAACAACCAAGAAGGAAGAGGATCATGATAACTGGGATCTGCCTGAAGAAGATACTCCATACTGA 570 0.5035 MAASYSFRNFLSFILPSKPPPPKTPPPSQLNLPSSSSCSSTSFSSQTHHKSPDSFTPLVAEDDGKHNSCLSAELSSVICPSLAYSNTLFFKSAYNVQVIVGENEPEERLLNRFRREVMKTGLIQECKRRRFFESKQAEEKRKTREAAKRNRRRPRSSRFSTESKPEVPITTKKEEDHDNWDLPEEDTPY 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1133 189 TIGRFAM S21p: ribosomal protein bS21 96 153 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele14g1133 189 Pfam Ribosomal protein S21 97 151 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele14g1133 189 Gene3D Ribosomal protein S8 110 148 IPR038380 -
Lele14g1133 189 MobiDBLite consensus disorder prediction 134 189 - -
Lele14g1133 189 MobiDBLite consensus disorder prediction 30 53 - -
Lele14g1133 189 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 189 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele14g1133 189 MobiDBLite consensus disorder prediction 17 59 - -
Lele14g1133 189 PRINTS Ribosomal protein S21 family signature 119 129 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele14g1133 189 PRINTS Ribosomal protein S21 family signature 131 141 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele14g1133 189 PRINTS Ribosomal protein S21 family signature 99 107 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele14g1133 189 PRINTS Ribosomal protein S21 family signature 107 116 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele14g1133 189 Hamap 30S ribosomal protein S21 [rpsU]. 95 151 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1133 Lele-ChrLele14 21003203 21004323 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0398 06 2442468 2443643 Lele14g1133 14 21003203 21004323 CCT
Lele07g0604 07 3457193 3459047 Lele14g1133 14 21003203 21004323 CCT
Lele08g0404 08 2487627 2488811 Lele14g1133 14 21003203 21004323 CCT
Lele14g1133 14 21003203 21004323 Lele15g1223 15 7090721 7091864 hybridization
Lele14g1133 14 21003203 21004323 Lele16g1255 16 7101490 7102661 hybridization