Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1235 ATGATACCATCGAACGCGGCGATGGCAGCCTCATCCTCTTTCAGCAATTTTCTCTCATTCATCTTACCCTCAAAACCACCACCTCCCAAGACGCCTACGCCTTCCCAATTGAATGTCCCTCCTTCTTCTTCCTCTTCTCCTCGCCTTTCCTCTCAGACTCACCACAAGTCGTCCGACAGCTTAGCTCCGCTTGTGGCTGAAGATGACGGAAAGCACAATTCTTGCTTATCGACGGAGTTATCCTCTGTCATATGCCCCTCTCTTGCTTATTCCAACACTCTCTTCTTCAAATCAGCCTACAATGTGCAGGTTATCGTTGGAGAGAACGAGCCCGAGGAGAGGCTCCTCAACAGGTTCCGTAGAGAGGTCATGAAGACCGGTCTCATTCAGGAATGCAAGCGCAGGAGGTTCTTCGAGAATAAGCAGGATGAGAAGAAGCGCAAGTCCCGTGAGGCTGCCAAGCGCAACCGCAGAAGGCCACGTCAATCAAGATTTTCAACAGAGAGTAGGCCGGAAGTCCCGACAACAACAAAGAAGGAAGAGGATGATGATAACTGGGATCTGCCCCAAGAAGACACTCCATACTGA 588 0.5051 MIPSNAAMAASSSFSNFLSFILPSKPPPPKTPTPSQLNVPPSSSSSPRLSSQTHHKSSDSLAPLVAEDDGKHNSCLSTELSSVICPSLAYSNTLFFKSAYNVQVIVGENEPEERLLNRFRREVMKTGLIQECKRRRFFENKQDEKKRKSREAAKRNRRRPRQSRFSTESRPEVPTTTKKEEDDDNWDLPQEDTPY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1235 195 TIGRFAM S21p: ribosomal protein bS21 102 159 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele13g1235 195 MobiDBLite consensus disorder prediction 140 195 - -
Lele13g1235 195 MobiDBLite consensus disorder prediction 37 59 - -
Lele13g1235 195 Pfam Ribosomal protein S21 103 157 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele13g1235 195 Hamap 30S ribosomal protein S21 [rpsU]. 101 157 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele13g1235 195 MobiDBLite consensus disorder prediction 25 61 - -
Lele13g1235 195 PRINTS Ribosomal protein S21 family signature 105 113 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele13g1235 195 PRINTS Ribosomal protein S21 family signature 125 135 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele13g1235 195 PRINTS Ribosomal protein S21 family signature 113 122 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele13g1235 195 PRINTS Ribosomal protein S21 family signature 137 147 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lele13g1235 195 Gene3D Ribosomal protein S8 116 154 IPR038380 -
Lele13g1235 195 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 8 195 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1235 Lele-ChrLele13 22665596 22666739 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0398 06 2442468 2443643 Lele13g1235 13 22665596 22666739 CCT
Lele07g0604 07 3457193 3459047 Lele13g1235 13 22665596 22666739 CCT
Lele08g0404 08 2487627 2488811 Lele13g1235 13 22665596 22666739 CCT
Lele13g1235 13 22665596 22666739 Lele15g1223 15 7090721 7091864 hybridization
Lele13g1235 13 22665596 22666739 Lele16g1255 16 7101490 7102661 hybridization