Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0227 ATGGCTTCTCACAACCACTGTCATAATCACAGAAACGACGATAATCACCTCAACGGCGACAACTTCGTTTCTCACGTACCCAAAAAGCCCAAGCTTGGCCCCTTCATTACTGACTCCGAAATTCAATCCGAATTCGCTCACCATGACCCCGCCGTTGCTCGGATTAACAACGGTAGCTTCGGTTGCTGCCCCGCTTCTGTAATTTCCGCTCAGCAAAAACTGCAACTGAAGAATCTCCGCCAGCCGGACCATTTCTACTTCAACGAGCTCCAGAAGGGGATTCTTCATTCCCGGACTCTTATCAGAGATATTGTTAATGCTGACCACGTCGATGAGATTTCTATAGTTGATAACGCCACCACGGCTGCTGCTATTGTCCTTCAGCAGACTGCCTGGGCCTTTCGAGAAGGAAAATTTCAAAAAGGGGACGTCGTTGTTATGCTTCATTGCGCTTACGGTAGCATCAAGAAGTCAATGGAGGCCTATGTTACGCGCGCCGGAGGCAAAGTTATTGAGGTTCAGCTTCCTTTTCCTGTGAATTCTAATGAGGAGATTATTAGTGAATTTAGGAGAGCGCTGGAGAGAGGAAAAGCTGGCGGGAGCAGGGTTAGGCTTGCTGTGATTGATCACGTCACTTCAATGCCGAGCGTGGTGATCCCTGTTAGGGATTTGGTAAAGATTTGTAGGGAAGAAGGCGTTGACCAAGTTTTCGTGGATGCAGCTCATGCTATTGGGTGTATTGATGTTGATGTGAAAGAGATCGGGGCAGACTTTTATACTAGCAATTTGCACAAATGGTGCTTTTGCCCACCTTCCATTGCCTTTTTGTATAGTCGGAAGTCGCCCAGATGCTCTGAATTGCATCATCCTGTTGTGTCCCATGAGTATGGTAATGGGTTGGCCATTGAAAGTGCTTGGATTGGCACAAGAGATTACAGTGCACAATTGGCGGTTCCCGCAGTTTTGGAATTTATCAGTAGATTTGAAGGTGGTATTGAAGGAATCAAGAAGAGGAATCATGAACTTGTCATGGAGATGGGACGAATGTTGGCCACAGCTTGGGAAACCCATCTTGGTAGTCCTCCAGATATGTGTGCGAGCATGGTTATGGTAGGGTTACCTGCTTGCTTGGGCATATTGAGCAATTCTGATGCTGAGAACCTAAGAACACTTTTGAGGGATGATTTTGGCGTTGAAGTGCCTATATATTATCGGCAACCAAAAGATGGAGAAACTGGACCAGTAACTGGATATGCCCGAATTTCTTATCAAGTTTACAATAAAGCTGATGATTATTACAAGTTCAGGGATGCAATTAATCAACTTGTGCGCAATAAGTTCACTTGTGCCCTTCTTTCTAATTTAGGAGGTGTTCTCTGA 1380 0.4565 MASHNHCHNHRNDDNHLNGDNFVSHVPKKPKLGPFITDSEIQSEFAHHDPAVARINNGSFGCCPASVISAQQKLQLKNLRQPDHFYFNELQKGILHSRTLIRDIVNADHVDEISIVDNATTAAAIVLQQTAWAFREGKFQKGDVVVMLHCAYGSIKKSMEAYVTRAGGKVIEVQLPFPVNSNEEIISEFRRALERGKAGGSRVRLAVIDHVTSMPSVVIPVRDLVKICREEGVDQVFVDAAHAIGCIDVDVKEIGADFYTSNLHKWCFCPPSIAFLYSRKSPRCSELHHPVVSHEYGNGLAIESAWIGTRDYSAQLAVPAVLEFISRFEGGIEGIKKRNHELVMEMGRMLATAWETHLGSPPDMCASMVMVGLPACLGILSNSDAENLRTLLRDDFGVEVPIYYRQPKDGETGPVTGYARISYQVYNKADDYYKFRDAINQLVRNKFTCALLSNLGGVL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0227 459 SUPERFAMILY PLP-dependent transferases 47 444 IPR015424 -
Lele16g0227 459 Gene3D - 67 327 IPR015421 GO:0003824
Lele16g0227 459 Pfam Aminotransferase class-V 82 358 IPR000192 -
Lele16g0227 459 MobiDBLite consensus disorder prediction 1 23 - -
Lele16g0227 459 MobiDBLite consensus disorder prediction 1 18 - -
Lele16g0227 459 PANTHER L-CYSTEINE DESULFHYDRASE 35 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0227 Lele-ChrLele16 1254848 1256227 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0065 06 421826 429067 Lele16g0227 16 1254848 1256227 CCT
Lele07g0262 07 1424064 1427029 Lele16g0227 16 1254848 1256227 CCT
Lele08g0068 08 400893 405071 Lele16g0227 16 1254848 1256227 CCT
Lele05g0246 05 1375156 1376544 Lele16g0227 16 1254848 1256227 CCT
Lele13g2193 13 28425451 28428186 Lele16g0227 16 1254848 1256227 hybridization
Lele14g2131 14 26803794 26807154 Lele16g0227 16 1254848 1256227 hybridization