Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0068 ATGTTTGTAATTTATAGAGAGCTTGTAAACGAACAGTATTACTGGGTTTATAACATATTGGTTCTCTTCATTATGAGGTCCAATCATCTGATGATAGCTTTCTGTTTATGGGCTTTAACATGCTCACTTCTTCCTTCTTTCTCTTCTGGGATTCTGAGGATTGGTTTGAAGAAGAGAACTATTGACCTTCAAAGCATTTGGGCTGCAAGAGCTGCAAGGGAAGAAGTACTGAGACCAGGAAGACCAGTGAAGGGAACATCATGTGCAATAAAATATGTATCTGGATCAATATCTGGTTTTGTCAGTCGAGACAAGGTCAAAGTTGGTGATGTGGTCGTAAAGCATCAAGATTTCATCGAGGTTACTCAGGAGACAACCCTTCCCTTTGCATTCCTTGAGTTTGATGGGATACTTGGACTTGGGTACAATATGGTGGATCAAGATCTTGTTAGTGAGAAGGTGTCCTCTTTTTGGCTCATTGTGGATCCGGAGGCAAAAGCAGGTGGTGAAATAGTATTTGGAGGTGTTGATACAAATCATTTCAAAGGAAAACATACTTATGATCCAATTACTAGAAAAGGTTTATGGCAGGGTGGATGTGCTGCTATTGTGGATTCAGGATCATCTTTGCTTACTGGTCCAACCGTAACTGTGGCTGAAATCAACCATGCCATTGGAGCTGAAGGATTTTTTAGTTCAGAATGTAAGGAATTAGCCCATCAATTTGCAGACAAGATATGGGACCTACTAGTATCAGGGGTAGACCCTTCCACCCTTCATATAAACTTTGACATTCTCAATGGGATTGAGATGGTGACTGAAACAATAGAAAGAGACAATAACATGTGCTCTTTTTGTGAGATGAATGTACTATGTGAAAGACTGCCAAGTCCTGCTGGAGAATCCACAGTAAGTTGTGAAGGTATTTCCCAGATGCCAAACATCACAATTACCATCGGAGATAAACTTTTCAACCTCACCTCAGAGCAGCATATATTGAAAGCTGGACAAGGCAAAGCAGCGATTTGCTTCAGTGGGATCCTGGGCGATGTTTTTATGAGGGCATATCATACGGTGTTTGACTATGGCAATCTCCAAGTGGGTTTTGCTGAGGCTGCCTAG 1122 0.4135 MFVIYRELVNEQYYWVYNILVLFIMRSNHLMIAFCLWALTCSLLPSFSSGILRIGLKKRTIDLQSIWAARAAREEVLRPGRPVKGTSCAIKYVSGSISGFVSRDKVKVGDVVVKHQDFIEVTQETTLPFAFLEFDGILGLGYNMVDQDLVSEKVSSFWLIVDPEAKAGGEIVFGGVDTNHFKGKHTYDPITRKGLWQGGCAAIVDSGSSLLTGPTVTVAEINHAIGAEGFFSSECKELAHQFADKIWDLLVSGVDPSTLHINFDILNGIEMVTETIERDNNMCSFCEMNVLCERLPSPAGESTVSCEGISQMPNITITIGDKLFNLTSEQHILKAGQGKAAICFSGILGDVFMRAYHTVFDYGNLQVGFAEAA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0068 373 Pfam Eukaryotic aspartyl protease 84 372 IPR033121 -
Lele08g0068 373 Gene3D - 230 296 - -
Lele08g0068 373 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 84 371 IPR001461 GO:0004190|GO:0006508
Lele08g0068 373 Gene3D Acid Proteases 176 373 IPR021109 -
Lele08g0068 373 Gene3D Acid Proteases 53 175 IPR021109 -
Lele08g0068 373 ProSiteProfiles Peptidase family A1 domain profile. 1 370 IPR033121 -
Lele08g0068 373 SUPERFAMILY Acid proteases 34 372 IPR021109 -
Lele08g0068 373 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 202 213 IPR001969 GO:0004190|GO:0006508
Lele08g0068 373 FunFam Lysosomal aspartic protease 73 228 - -
Lele08g0068 373 PRINTS Pepsin (A1) aspartic protease family signature 346 361 IPR001461 GO:0004190|GO:0006508
Lele08g0068 373 PRINTS Pepsin (A1) aspartic protease family signature 169 182 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0068 Lele-ChrLele08 400893 405071 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0068 08 400893 405071 Lele13g2193 13 28425451 28428186 CCT
Lele08g0068 08 400893 405071 Lele14g2131 14 26803794 26807154 CCT
Lele08g0068 08 400893 405071 Lele15g0219 15 1246577 1247956 CCT
Lele08g0068 08 400893 405071 Lele16g0227 16 1254848 1256227 CCT
Lele07g0262 07 1424064 1427029 Lele08g0068 08 400893 405071 ECH
Lele08g0068 08 400893 405071 Lele08g0068 08 400893 405071 ECH
Lele05g0249 05 1383432 1395055 Lele08g0068 08 400893 405071 hybridization
Lele06g0065 06 421826 429067 Lele08g0068 08 400893 405071 hybridization