Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0262 ATGAGGTCCAAGCATCTGTGGATAGCTTTCTGTTTATGGGCCTTAACATGCTCACTTCTTCCTTCTTTCTCTTCTGGGATTCTCAGAATTGGTTTGAAGAAGAGACCTCTTGACCTTCAAAGAATTCGGGCTGCAAGAGCTGCAAGGGAAGAACTGAGACCAGGAAGACCAGTGAAGGGTTCATATCAGTATATTAGTAATTCAAACGATGAAGATATACTACCTCTCAAAAATTATATGGATGCGCAATATTTTGGAGAGATTGGAATAGGCACACCCTCACAGACCTTCACTGTCATATTTGATACTGGTAGTTCCAACCTTTGGGTTCCATCATCATGGTGCTATTTTTCGGTTGCCTGTTATGTCCATTCCTGGTACAAGGCTAGCAAATCCAGTACATACATTGAGAATGGAACATCGTGTGAGATACAATATGGGTCGGGATCGTTATCTGGTTTTTTCAGTCAAGATGACGTTAAAGTTGGTGATGCGGTCGTAAAGCATCAAGATTTCATTGAGGCTACTCGAGAGAAAAGTTTTTCCTTTGCACTCGCCAAGTTTGACGGGATACTTGGACTTGGGTTTCAGGAAATCTCAGTTGAGAAAGCAGTGCCGGTTTGGTACAATATGGTGGATTACGATCTTGTTAGTGAGAAGGTGTTCTCTTTTTGGCTCAATGTGGATCCGGAGGCAGAAGCGGGTGGTGAAATAGTATTTGGAGGTGTTGATCCAAATCACTTCAAAGGAAAACATACTTATGTTCCAATTACTAGAAAAGGTTACTGGCAGATTGAAATAGGAGATTTTCTCATTGGGGGTCTTTCAACAGGTGTGTGCAAGGGTGGATGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACCTCGGTTGTGGCCGAAATCAACCATGCAATTGGAGCTGAGGGAGTTGTGAGTTCAGAATGTAAGGAAGTAGTTTCTCAATATGGAGAAAGGATATGGGATCTATTAGTATCAGGGGTAGGCCGTTCCACCCTTTCATATAAAGTTTTTTATCTTTTGCAGGTGGAGCCTAATGAAGTATGTTCACAACTTGGTTTATGCTCTGCATTTAGGGATCAATCTAAAAGCAATGGGATCAAAATGGTGACTGAAACAATAGAAAGAGGGGGCATGTCAGCTAGAGATGATGATATGTGCTCTCTTTGTGAGATGGCTGTCGTTTGGGTCCAGAATCAACTAAAACGGAAGGTAACCAAGGAAAAAGTGATCCACTACATAAATCAGTTATGTGAAAGACTGCCAAGCCCTGGTGGAGAATCCACAATAAGTTGTGATGGTATTTCTCAGATGCCAAACATCACAATTACTATCGGAGACAAACTTTTCAACCTCACTCCAGAGCAGTATATTTTGAAAACGGGAGAAGGAGATGCAGCAACTTGCCTCAGTGGGTTTACAGCTTTTGATATTCCTCCTCCTCAAGGCCCTCTCTGGATCCTTGGCGATGTTTTCATGAGGGTATATCACACGGTGTTTGACTATGGCAATCTCCAAGTGGGTTTTGCTGAAGCTGCCTAG 1572 0.4262 MRSKHLWIAFCLWALTCSLLPSFSSGILRIGLKKRPLDLQRIRAARAAREELRPGRPVKGSYQYISNSNDEDILPLKNYMDAQYFGEIGIGTPSQTFTVIFDTGSSNLWVPSSWCYFSVACYVHSWYKASKSSTYIENGTSCEIQYGSGSLSGFFSQDDVKVGDAVVKHQDFIEATREKSFSFALAKFDGILGLGFQEISVEKAVPVWYNMVDYDLVSEKVFSFWLNVDPEAEAGGEIVFGGVDPNHFKGKHTYVPITRKGYWQIEIGDFLIGGLSTGVCKGGCAAIVDSGTSLLAGPTSVVAEINHAIGAEGVVSSECKEVVSQYGERIWDLLVSGVGRSTLSYKVFYLLQVEPNEVCSQLGLCSAFRDQSKSNGIKMVTETIERGGMSARDDDMCSLCEMAVVWVQNQLKRKVTKEKVIHYINQLCERLPSPGGESTISCDGISQMPNITITIGDKLFNLTPEQYILKTGEGDAATCLSGFTAFDIPPPQGPLWILGDVFMRVYHTVFDYGNLQVGFAEAA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0262 523 Gene3D Acid Proteases 243 523 IPR021109 -
Lele07g0262 523 Pfam Saposin-like type B, region 1 395 432 IPR007856 GO:0006629
Lele07g0262 523 PRINTS Pepsin (A1) aspartic protease family signature 496 511 IPR001461 GO:0004190|GO:0006508
Lele07g0262 523 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Lele07g0262 523 PRINTS Pepsin (A1) aspartic protease family signature 236 249 IPR001461 GO:0004190|GO:0006508
Lele07g0262 523 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 18 521 IPR001461 GO:0004190|GO:0006508
Lele07g0262 523 FunFam Lysosomal aspartic protease 372 522 - -
Lele07g0262 523 CDD phytepsin 74 521 IPR033869 GO:0004190
Lele07g0262 523 FunFam Lysosomal aspartic protease 70 312 - -
Lele07g0262 523 ProSiteProfiles Peptidase family A1 domain profile. 84 520 IPR033121 -
Lele07g0262 523 ProSiteProfiles Saposin B type domain profile. 314 369 IPR008139 -
Lele07g0262 523 ProSiteProfiles Saposin B type domain profile. 393 434 IPR008139 -
Lele07g0262 523 Pfam Eukaryotic aspartyl protease 83 522 IPR033121 -
Lele07g0262 523 Gene3D - 314 432 - -
Lele07g0262 523 SUPERFAMILY Acid proteases 8 522 IPR021109 -
Lele07g0262 523 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 99 110 IPR001969 GO:0004190|GO:0006508
Lele07g0262 523 Pfam Saposin-like type B, region 2 318 365 IPR008138 -
Lele07g0262 523 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 286 297 IPR001969 GO:0004190|GO:0006508
Lele07g0262 523 Gene3D Acid Proteases 28 242 IPR021109 -
Lele07g0262 523 SUPERFAMILY Saposin 315 432 IPR011001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0262 Lele-ChrLele07 1424064 1427029 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0262 07 1424064 1427029 Lele13g2193 13 28425451 28428186 CCT
Lele07g0262 07 1424064 1427029 Lele14g2131 14 26803794 26807154 CCT
Lele07g0262 07 1424064 1427029 Lele15g0219 15 1246577 1247956 CCT
Lele07g0262 07 1424064 1427029 Lele16g0227 16 1254848 1256227 CCT
Lele07g0262 07 1424064 1427029 Lele08g0068 08 400893 405071 ECH
Lele07g0262 07 1424064 1427029 Lele07g0262 07 1424064 1427029 ECH
Lele05g0249 05 1383432 1395055 Lele07g0262 07 1424064 1427029 hybridization
Lele06g0065 06 421826 429067 Lele07g0262 07 1424064 1427029 hybridization