Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0246 ATGGCTTCCGCTGGCCACAATAATCACGTTCACGGCCACGAAGATCCCAATCACACCAACGGCTTCGCCCTTTCCCACATGCCCAAGAAGCTCAAGCTCTCTTCTCCTTCTTCTCCACCTTTCATCACCGACTCCGAAATTGAATCCGAGTTCTCTCACCACGACCCTGTCGTTGCCCGACTCAACAACGGCGCCTTCGGTTGCTGCCCTGCTTCTGTTATTTCTGCTCATCAAGAATGGCATCTTAAATATCTCCGTCAACCCGACGATTTCTACTTCAATCACCTCCAGAAGGGGATTCTTCAATCCAGGACCATAATAAAAGACCTTGTTAACGCGGATCACCTTGATGAGATTTCCATTGTCGATAACGCCACCACAGCCGCTGCTATTGTTCTCCGGCAGGTCGCCTGGGCTTTTCGCGAAGGCAAATTCCAAAAAGGCGATGTCGTCATTATGCTTCATTACGCTTATGGAGCAGTCAAGAAGTCAATAGAGGCCTATGTCGTACGTTCTGGGGGTGAAGTTATCGAAGTTGACCTACCTTTTCCAGTGAGTTCTGATCAGGAGATCATAACCGAATTCAGGAGGGGATTGGAGAGAGGAAAGGCCGATGGGAAGAGGATTAGATTAGCTGTGATCGATCACATCACTTCAATGCCCAGCGTGGTGATTCCAGTTAAGGAGCTGGTTAAGATTTGCAGGGAAGAAAATGTTGAACAAGTTTTCGTGGATGCTGCTCATGCTATTGGTTGCACAGATGTTGATATGAAGGAGATTGGTGCAGACTTCTACGCTAGCAATTTGCACAAATGGTTCTTTTGTCCTCCTTCGATTGCCTTCTTCTATTGTCGCAGGTCTCCCAAATCCTGTGATCTGCACCATCCCGTGGTGTCTCACGAGTATGGCAACGGATTGGCCATAGAATGTTCTTGGATTGGCACGAGAGATTATAGTCCCCAGTTGGTTGTTCCTGCGGTTTTAAGGTTTGTGGACAGATTCGAAGGTGGTATTGAAGGGATTAAGAAGAGGAATCATGATGTTGTTGTAGAGATGGGAGAGATGTTGGCCCAAGCATGGGGGACTCATCTGGGGACTCCTCCACATATGTGTGCCAGCATGATCATGGTGGGCTTGCCTGCTTCTTTGGGGATTACTTGTGATTCTGATGCTATCAAGTTAAGGAATCATTTGAGGGATAATCTTGGGATTGAAGTCCCAATATATTATAGGACTCCAACAGATGGGGAGGTTGAATCCTTGACTGTGACTGGATATGCTCGAATTTCTCACCAAGTATATAACAAGGTTGATGATTATTACAAGTTCAGGGATGCCATTAATCAACTTGTACGCGATGGCTTTACTTGTGCTCTTCTGTCTGATTGA 1389 0.4665 MASAGHNNHVHGHEDPNHTNGFALSHMPKKLKLSSPSSPPFITDSEIESEFSHHDPVVARLNNGAFGCCPASVISAHQEWHLKYLRQPDDFYFNHLQKGILQSRTIIKDLVNADHLDEISIVDNATTAAAIVLRQVAWAFREGKFQKGDVVIMLHYAYGAVKKSIEAYVVRSGGEVIEVDLPFPVSSDQEIITEFRRGLERGKADGKRIRLAVIDHITSMPSVVIPVKELVKICREENVEQVFVDAAHAIGCTDVDMKEIGADFYASNLHKWFFCPPSIAFFYCRRSPKSCDLHHPVVSHEYGNGLAIECSWIGTRDYSPQLVVPAVLRFVDRFEGGIEGIKKRNHDVVVEMGEMLAQAWGTHLGTPPHMCASMIMVGLPASLGITCDSDAIKLRNHLRDNLGIEVPIYYRTPTDGEVESLTVTGYARISHQVYNKVDDYYKFRDAINQLVRDGFTCALLSD 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0246 462 MobiDBLite consensus disorder prediction 1 24 - -
Lele05g0246 462 Pfam Aminotransferase class-V 70 288 IPR000192 -
Lele05g0246 462 SUPERFAMILY PLP-dependent transferases 56 452 IPR015424 -
Lele05g0246 462 PANTHER L-CYSTEINE DESULFHYDRASE 40 458 - -
Lele05g0246 462 Gene3D - 91 318 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0246 Lele-ChrLele05 1375156 1376544 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0246 05 1375156 1376544 Lele13g2193 13 28425451 28428186 CCT
Lele05g0246 05 1375156 1376544 Lele14g2131 14 26803794 26807154 CCT
Lele05g0246 05 1375156 1376544 Lele15g0219 15 1246577 1247956 CCT
Lele05g0246 05 1375156 1376544 Lele16g0227 16 1254848 1256227 CCT
Lele05g0246 05 1375156 1376544 Lele05g0246 05 1375156 1376544 ECH
Lele05g0246 05 1375156 1376544 Lele07g0258 07 1408570 1409958 hybridization
Lele05g0246 05 1375156 1376544 Lele08g0063 08 382709 385323 hybridization