Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0936 ATGTCTGACGCGTTCTGCAGCGACTGTAAGCGCCAGACCGAGGTGGTCTTCGATCACTCGGCCGGTGACACCGTGTGTTCTGAGTGTGGGCTCGTGCTCGAGTCCCATAACATTGATGAAACTTCTGAGTGGCGTACCTTCGCGAACGAGTCTGCTGATAACGACCCGGTTCGTGTCGGTGGACCCACCAACCCGCTCTTGACTGACGGCGGCTTATCCACCGTCATAGCAAAGCCCAATGGAACCTCCGGCGAATTTCTATCGTCGTCTTTGGGTCGGTGGCAGAATCGCGGTTCGAACCCGGATCGAGGGCTGATTCTGGCTTTCAAGACCATTGCTACTATGTCTGATAGGTTGGGACTTGTTGCAACCATTAAGGATCGGGCTAATGAAATATATAAGAGGGTTGAAGATCAGAAGTCCAGTAGGGGAAGAAACCAGGATGCTTTGTTGGCTGCTTGTCTTTACATAGCTTGTCGACAAGAAGACAAACCACGTACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCTACAAAGAAGGAAATTGGCCGAGCAAAAGAATATATAGTGAAACAACTGGGTTTGGAGCAGGGTCAGTCAGTGGAGATGGGAACGATACATGCTGGGGACTTTATGAGGCGATTTTGTTCTAATCTTGGCATGAATAATCAAGCGGTTAAAGCTGCTCAGGAATCTGTGCAGAAATCAGAAGAATTTGATATAAGGAGGAGCCCCATATCAATTGCTGCAGCTGTGATTTACATTATAACTCAGCTTTCAGATGATAAGAAACCTCTCAAAGATATATCATTGGCCACAGGAGTGGCAGAAGGAACCATTAGGAACTCTTACAAGGATCTTTATCCTCATGTTTCAAAAATCATACCAAGTTGGTATGCCAAGGAGGAGGACCTTAAGAATCTTTGCAGCCCTTAA 939 0.4696 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHNIDETSEWRTFANESADNDPVRVGGPTNPLLTDGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEEDLKNLCSP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0936 312 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Lele15g0936 312 ProSitePatterns Transcription factor TFIIB repeat signature. 144 159 IPR023486 -
Lele15g0936 312 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Lele15g0936 312 Gene3D - 5 193 - -
Lele15g0936 312 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Lele15g0936 312 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 4 309 IPR000812 GO:0006352|GO:0070897
Lele15g0936 312 CDD CYCLIN 207 289 IPR013763 -
Lele15g0936 312 FunFam transcription initiation factor IIB 91 197 - -
Lele15g0936 312 SMART cyclin_7 110 192 IPR013763 -
Lele15g0936 312 SMART cyclin_7 211 290 IPR013763 -
Lele15g0936 312 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Lele15g0936 312 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Lele15g0936 312 PRINTS Transcription initiation factor IIB signature 212 230 IPR000812 GO:0006352|GO:0070897
Lele15g0936 312 PRINTS Transcription initiation factor IIB signature 179 194 IPR000812 GO:0006352|GO:0070897
Lele15g0936 312 PRINTS Transcription initiation factor IIB signature 244 260 IPR000812 GO:0006352|GO:0070897
Lele15g0936 312 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Lele15g0936 312 PRINTS Transcription initiation factor IIB signature 152 171 IPR000812 GO:0006352|GO:0070897
Lele15g0936 312 PRINTS Transcription initiation factor IIB signature 276 290 IPR000812 GO:0006352|GO:0070897
Lele15g0936 312 FunFam Transcription initiation factor IIB 5 193 - -
Lele15g0936 312 SUPERFAMILY Cyclin-like 207 308 IPR036915 -
Lele15g0936 312 Gene3D - 208 311 - -
Lele15g0936 312 CDD CYCLIN 104 185 IPR013763 -
Lele15g0936 312 FunFam Transcription initiation factor IIB 208 311 - -
Lele15g0936 312 SUPERFAMILY Cyclin-like 105 196 IPR036915 -
Lele15g0936 312 Pfam Transcription factor TFIIB repeat 103 185 IPR013150 GO:0017025
Lele15g0936 312 Pfam Transcription factor TFIIB repeat 204 290 IPR013150 GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0936 Lele-ChrLele15 5465158 5467893 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0850 05 5187521 5191115 Lele15g0936 15 5465158 5467893 CCT
Lele15g0936 15 5465158 5467893 Lele05g0862 05 5285960 5286875 CCT
Lele15g0936 15 5465158 5467893 Lele06g0715 06 4413622 4416816 CCT
Lele15g0936 15 5465158 5467893 Lele07g0904 07 5357631 5360837 CCT
Lele15g0936 15 5465158 5467893 Lele08g0717 08 4449121 4449903 CCT
Lele13g1490 13 24248543 24261554 Lele15g0936 15 5465158 5467893 hybridization
Lele14g1413 14 22644594 22647677 Lele15g0936 15 5465158 5467893 hybridization