Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0850 ATGTCTGATGCGTTTTGCTCCGACTGCAAGCGCCAGACCGAGGTTGTTTTCGATCACTCGGCTGGTGACACCGTCTGTTCCGAGTGTGGCCTCGTTCTAGAGTCCCATTCCATTGATGAGACATCCGAGTGGCGTACCTTCGCCAACGAGTCTGGCGATAATGACCCCGTCCGTGTCGGAGGACCCACCAACCCTCTTCTGGCCGATGGTGGCTTGTCCACGGTGATAGCCAAGCCCAACGGATCCAGCGGCGAGTTTCTGTCATCCTCCCTTGGTAGGTGGCAGAACCGTGGGTCGAACCCGGATCGAGGGTTGATTCTGGCCTTTAAAACCATTGCAACTATGTCTGATCGGTTGGGACTCGTTGCAACTATTAAGGACCGAGCTAATGAGATATATAAGAGGGTTGAAGATCAGAAATCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAAGACAAGCCGCGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCCACTAAGAAGGAAATTGGCCGAGCAAAAGAATACATAGTGAAACAACTGGGTTTGGAGAATGGTCAGTCAGTGGAAATGGGAACAATACATGCTGGGGATTTTATGAGGCGATTTTGTTCTAATCTTGGTATGAACAATCAAGCTGTTAAAGCTGCTCAAGAAGCAGTGCAGAAATCAGAAGAGTTTGATATAAGGAGGAGTCCCATATCTATTGCTGCGGCTGTTATATATATCATAACTCAACTTTCAGATGATAAGAAACCTCTTAAAGATATATCAGTTGCCACCGGAGTTGCGGAAGGAACCATTAGGAACTCGTACAAGGATCTTTATCCGCATGTTTCTAAGATAATACCAACCTGGTATGCTAAGGAGGAGGATCTCAAGAATCTTTGCAGCCCTTGA 939 0.4707 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGSSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLCSP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0850 312 ProSitePatterns Transcription factor TFIIB repeat signature. 144 159 IPR023486 -
Lele05g0850 312 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Lele05g0850 312 SUPERFAMILY Cyclin-like 207 308 IPR036915 -
Lele05g0850 312 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 4 309 IPR000812 GO:0006352|GO:0070897
Lele05g0850 312 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Lele05g0850 312 CDD CYCLIN 207 289 IPR013763 -
Lele05g0850 312 Gene3D - 208 311 - -
Lele05g0850 312 SUPERFAMILY Cyclin-like 105 196 IPR036915 -
Lele05g0850 312 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Lele05g0850 312 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Lele05g0850 312 PRINTS Transcription initiation factor IIB signature 212 230 IPR000812 GO:0006352|GO:0070897
Lele05g0850 312 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Lele05g0850 312 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Lele05g0850 312 PRINTS Transcription initiation factor IIB signature 179 194 IPR000812 GO:0006352|GO:0070897
Lele05g0850 312 PRINTS Transcription initiation factor IIB signature 244 260 IPR000812 GO:0006352|GO:0070897
Lele05g0850 312 PRINTS Transcription initiation factor IIB signature 152 171 IPR000812 GO:0006352|GO:0070897
Lele05g0850 312 PRINTS Transcription initiation factor IIB signature 276 290 IPR000812 GO:0006352|GO:0070897
Lele05g0850 312 SMART cyclin_7 211 290 IPR013763 -
Lele05g0850 312 SMART cyclin_7 110 192 IPR013763 -
Lele05g0850 312 Pfam Transcription factor TFIIB repeat 103 185 IPR013150 GO:0017025
Lele05g0850 312 Pfam Transcription factor TFIIB repeat 204 290 IPR013150 GO:0017025
Lele05g0850 312 Gene3D - 5 193 - -
Lele05g0850 312 FunFam Transcription initiation factor IIB 5 193 - -
Lele05g0850 312 CDD CYCLIN 104 185 IPR013763 -
Lele05g0850 312 FunFam transcription initiation factor IIB 91 197 - -
Lele05g0850 312 FunFam Transcription initiation factor IIB 208 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0850 Lele-ChrLele05 5187521 5191115 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0850 05 5187521 5191115 Lele13g1490 13 24248543 24261554 CCT
Lele05g0850 05 5187521 5191115 Lele14g1413 14 22644594 22647677 CCT
Lele05g0850 05 5187521 5191115 Lele15g0936 15 5465158 5467893 CCT
Lele05g0850 05 5187521 5191115 Lele16g0960 16 5430923 5433991 CCT
Lele05g0850 05 5187521 5191115 Lele05g0850 05 5187521 5191115 ECH
Lele05g0850 05 5187521 5191115 Lele07g0889 07 5251055 5254742 hybridization
Lele05g0850 05 5187521 5191115 Lele08g0702 08 4307593 4311595 hybridization