Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0715 ATGCCCGGAACTGAAATATGGAGAATTGAGAATTTTCAGCCAGTTCCTTTGCCCAAATCCGAACATGGAAAATTCTACATGGGTGATTCGTATCTCATATTGCAGACAACTCAAGCAAAAGGAGGCGCTTACTTTTATGATTTACACTTCTGGATTGGAAAGGACACAAGTCAGGATGAGGCTGGAACAGCAGCCATCAAAACCGTTGAACTTGATGCTGCTCTTGGTGGACGTGCAGTGCAGCATAGGGAAATCCAAGGCCATGAATCCGACAAGTTCTTGTCATACTTTAAACCATGTATCATACCATTAGAGGGAGGTGTTGCGTCAGGATTTAGAAAACCTGAAGAAGAAGAGTTTGAAACACGATTGTACATATGCAAGGGAAAGCGAGCTGTACCTTTTGCACGGTCGTCACTGAATCATGATGATGTTTTTATCCTAGACACAGAGAATAAAATTTATCAGTTCAACGGTGGAAATTCCAATCTTCAAGAAAGAGCTAAGGCTTTGGAAGTAATTCAATTTCTGAAGGAAAAGTATCATGATGGGACATGTGACGTTGCAATTGTTGATGATGGCAGGTTGGACACTGAGTCAGACTCAGGTGAATTTTGGGTCCTTTTTGGTGGTTTTGCTCCCATTGGAAAGAAGGTCATCTCTGAGGATGATATAATTCCAGAGGCCGCTCCAGCTCAACTTCATTTGTATGTTGATTTCTTCTCATCCCTTCTCCCATTCCCTCAAAAATCTAAATGTCCTTGTAGCATTGATGATGGCGAGGTCAAGCCCGTAGAAGGTGAATTGTCTAAATCACTATTGGAGAACAGCAAATGCTATATACTGGACTGTGGGGCTGAGGTATTTCTTTGGGTTGGCCGGGTAACACAAGTTGAAGAAAGAAAATCAGCCTGTGATAGGTTCTGA 927 0.4229 MPGTEIWRIENFQPVPLPKSEHGKFYMGDSYLILQTTQAKGGAYFYDLHFWIGKDTSQDEAGTAAIKTVELDAALGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGFRKPEEEEFETRLYICKGKRAVPFARSSLNHDDVFILDTENKIYQFNGGNSNLQERAKALEVIQFLKEKYHDGTCDVAIVDDGRLDTESDSGEFWVLFGGFAPIGKKVISEDDIIPEAAPAQLHLYVDFFSSLLPFPQKSKCPCSIDDGEVKPVEGELSKSLLENSKCYILDCGAEVFLWVGRVTQVEERKSACDRF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0715 308 SUPERFAMILY Actin depolymerizing proteins 112 215 - -
Lele06g0715 308 Pfam Gelsolin repeat 262 305 IPR007123 -
Lele06g0715 308 Pfam Gelsolin repeat 132 194 IPR007123 -
Lele06g0715 308 Pfam Gelsolin repeat 12 94 IPR007123 -
Lele06g0715 308 CDD gelsolin_S2_like 121 210 - -
Lele06g0715 308 PANTHER VILLIN 2 305 IPR007122 GO:0051015
Lele06g0715 308 SMART VILL_6 122 212 IPR007122 GO:0051015
Lele06g0715 308 SMART VILL_6 2 100 IPR007122 GO:0051015
Lele06g0715 308 CDD gelsolin_S1_like 2 107 - -
Lele06g0715 308 Gene3D Severin 115 220 IPR029006 -
Lele06g0715 308 Gene3D Severin 252 307 IPR029006 -
Lele06g0715 308 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 257 305 IPR036180 -
Lele06g0715 308 SUPERFAMILY Actin depolymerizing proteins 2 131 - -
Lele06g0715 308 PRINTS Gelsolin family signature 80 100 IPR007122 GO:0051015
Lele06g0715 308 PRINTS Gelsolin family signature 47 65 IPR007122 GO:0051015
Lele06g0715 308 PRINTS Gelsolin family signature 21 37 IPR007122 GO:0051015
Lele06g0715 308 PRINTS Gelsolin family signature 271 293 IPR007122 GO:0051015
Lele06g0715 308 FunFam Gelsolin 1 114 - -
Lele06g0715 308 Gene3D Severin 1 114 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0715 Lele-ChrLele06 4413622 4416816 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1490 13 24248543 24261554 Lele06g0715 06 4413622 4416816 CCT
Lele14g1413 14 22644594 22647677 Lele06g0715 06 4413622 4416816 CCT
Lele15g0936 15 5465158 5467893 Lele06g0715 06 4413622 4416816 CCT
Lele16g0960 16 5430923 5433991 Lele06g0715 06 4413622 4416816 CCT
Lele06g0715 06 4413622 4416816 Lele07g0904 07 5357631 5360837 hybridization
Lele06g0715 06 4413622 4416816 Lele08g0717 08 4449121 4449903 hybridization