Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1490 ATGTCTGACGCGTTCTGCAGCGACTGTAAGCGCCAGACCGAGGTGGTCTTCGATCACTCGGCCGGTGACACCGTGTGTTCTGAGTGCGGACTCGTGCTCGAGTCCCATAACATTGATGAAACTTCTGAGTGGCGTACCTTCGCTAACGAGTCTGCTGATAACGACCCGGTTCGTGTCGGTGGACCCACCAACCCGCTCTTGACTGACGGCGGCTTATCCACCGTCATAGCAAAGCCCAATGGAACCTCCGGCGAATTTCTATCGTCGTCTTTGGGTCGGTGGCAGAATCGCGGGTCGAACCCGGATCGAGGGCTGATTCTGGCTTTCAAGACCATTGCCACTATGTCAGATAGAAATCTCACCGAGAAGCTTTGTCTGCTATATCATGGTAGTGAAAGAGGAATTGATGAGTTCCCATATCTTAGTTATTACAAGGTTGATATGATGGACTGTGAAGCCAATTGCTATGCATATAGATTTGTGGGATGCGTTCCGTTACAGATTCGTGAGTTGGGACTTGTTGCAACCATTAAGGATCGGGCTAATGAAATATATAAGAGGGTTGAAGATCAGAAGTCCAGTAGGGGAAGAAACCAGGATGCTTTGTTGGCTGCTTGTCTTTACATAGCTTGTCGACAAGAAGACAAACCACGTACTGTAAAGGCTACAAAGAAGGAAATTGGCCGAGCAAAAGAATATATAGTGAAACAACTGGGTTTGGAGCAGGGTCAGTCAGTGGAGATGGGAACGATACATGCTGGGGACTTTATGAGGCGATTTTGTTCTAATCTTGGCATGAATAATCAAGCGGTTAAAGCGGCTCAGGAATCTGTGCAGAAATCAGAAGAATTTGATATAAGGAGGAGCCCCATATCAATTGCTGCAGCTGTGATTTACATTATAACTCAGCTTTCAGATGATAAGAAACCTCTCAAAGATATATCATTGGCCACAGGAGTGGCAGAAGGAACCATTAGGAACTCGTACAAGGATCTTTATCCTCATGTTTCAAAAATCATACCAAGTTGGTATGCCAAGGAGGAGGACCTTAAGAATCTTTGCAGCCCTTAA 1071 0.4622 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHNIDETSEWRTFANESADNDPVRVGGPTNPLLTDGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRNLTEKLCLLYHGSERGIDEFPYLSYYKVDMMDCEANCYAYRFVGCVPLQIRELGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKATKKEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEEDLKNLCSP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1490 356 FunFam Transcription initiation factor IIB 252 355 - -
Lele13g1490 356 Gene3D - 252 355 - -
Lele13g1490 356 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Lele13g1490 356 PRINTS Transcription initiation factor IIB signature 204 223 IPR000812 GO:0006352|GO:0070897
Lele13g1490 356 PRINTS Transcription initiation factor IIB signature 288 304 IPR000812 GO:0006352|GO:0070897
Lele13g1490 356 PRINTS Transcription initiation factor IIB signature 320 334 IPR000812 GO:0006352|GO:0070897
Lele13g1490 356 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Lele13g1490 356 PRINTS Transcription initiation factor IIB signature 256 274 IPR000812 GO:0006352|GO:0070897
Lele13g1490 356 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Lele13g1490 356 CDD CYCLIN 251 333 IPR013763 -
Lele13g1490 356 Pfam Transcription factor TFIIB repeat 248 334 IPR013150 GO:0017025
Lele13g1490 356 Pfam Transcription factor TFIIB repeat 170 222 IPR013150 GO:0017025
Lele13g1490 356 SMART cyclin_7 166 244 IPR013763 -
Lele13g1490 356 SMART cyclin_7 255 334 IPR013763 -
Lele13g1490 356 SUPERFAMILY Cyclin-like 251 352 IPR036915 -
Lele13g1490 356 Gene3D - 5 237 - -
Lele13g1490 356 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 170 353 IPR000812 GO:0006352|GO:0070897
Lele13g1490 356 ProSitePatterns Transcription factor TFIIB repeat signature. 196 211 IPR023486 -
Lele13g1490 356 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Lele13g1490 356 SUPERFAMILY Cyclin-like 170 240 IPR036915 -
Lele13g1490 356 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Lele13g1490 356 CDD CYCLIN 168 229 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1490 Lele-ChrLele13 24248543 24261554 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0850 05 5187521 5191115 Lele13g1490 13 24248543 24261554 CCT
Lele13g1490 13 24248543 24261554 Lele05g0862 05 5285960 5286875 CCT
Lele13g1490 13 24248543 24261554 Lele06g0715 06 4413622 4416816 CCT
Lele13g1490 13 24248543 24261554 Lele07g0904 07 5357631 5360837 CCT
Lele13g1490 13 24248543 24261554 Lele08g0717 08 4449121 4449903 CCT
Lele13g1490 13 24248543 24261554 Lele15g0936 15 5465158 5467893 hybridization
Lele13g1490 13 24248543 24261554 Lele16g0960 16 5430923 5433991 hybridization