Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2092 ATGGACTTTAAGTATTCTCCTCTGTTACAGGTGGCTGTGCTTCTTCTGGCATTAAGCACTGCTGTAGAGAGTATTAATGGCGGACCATGCGAGCAGAGAATATTGGATGTGAGGCCTCACAGTGTCTCAATTCTAGAGTTTGGGGCAGTAGGAGATGGGAAAAAGCTCAACACGGTCGCCTTCCAAAATTCAATATTCTATCTCAAGTCCTTTGCTGATAAAGGTGGTGCACAGTTATATGTTCCCTCAGGAACATGGCTCACCGGAAGCTTCAACCTTACCAGCCACCTCACCCTCTTCCTTGCTCGTGGTGCCACCATTGTTGCATCCCAGGATATCGAGCACTGGAGTGTGGTGGATCCCCTGCCTTCGTATGGTGGAGTTCTGGGAAAGAGATATCGCAGCTTAATTTACGGACAGAACTTGAGCGACGTGGTGATTACAGGTGATAATGGGACTATTGATGGCCAGGGTGCTCTCTGGTGGGACATGTTCTATTCTCATTCCTTGAATTACAGCCGACCACATCTCGTGGAATTCATAGGTTCTGACGACATCATTATCTCGAATTTAACGTTTTTAAATCCTCCTGCCTGGGACATCCATCCAGTGTATTGCAGCAACGTTCGGATTCACAACATTACAGCTCGTGCGCCCATTGATTCCCCTTACACCAGTGGTATAGTTCCAGATTCTTCAGAGAACATATGCATTGAGAACAGCAACATTAGCAGTGGCCATGATGCGATTGTGCTGAAGAGTGGTTGGGATGAGTATGGAATGTCGTATGGCAAAGCGACGTCGAGAGTGCACATAAGGAGTGTGAGGCTTCAATCATCATCAGGTGCTGGCTTGGCTTTTGGAAGCGAGATGTCTGGAGGCATATCCAACGTAATTGCGGAGCACTTCCTCGTACTCGATTCCTATGTCGGCATCAAAGTGAAGACAACAAAGGGTAGGGGTGGCTATGTCAGAGACATTCTCGTCTCAGACGCACGATTGCAAAATATCTATCTAGGATTCAGCATCGATGCGTTCTACGGTTCTCATCCTGATGAGGACTACGATCGGAGTGCGCTTCCTGTTGTTGGTGGCATTACTTATAATGACGCGGTTGGTGGGAATATTACTGTTGCTGGCAATTTCTCGGGATTAGTTGATTCGCCATTCCAATCAATCTGTCTTTCAAATGTGACTTTTTTAATTAGTTCCGAGTCATCATCTCCTTCATGGGTTTGCTCTAACGTCAAAGGTTTCTCTGAAGAGGTACTTCCTGAGCCTTGTCCTGATCTCCAGAGCTCTTCTTCCTCCTCTTCTTGCTTTGCCTCTTCCACATATCCATCAACTTGCGTCTCGAGCTTATGA 1365 0.4674 MDFKYSPLLQVAVLLLALSTAVESINGGPCEQRILDVRPHSVSILEFGAVGDGKKLNTVAFQNSIFYLKSFADKGGAQLYVPSGTWLTGSFNLTSHLTLFLARGATIVASQDIEHWSVVDPLPSYGGVLGKRYRSLIYGQNLSDVVITGDNGTIDGQGALWWDMFYSHSLNYSRPHLVEFIGSDDIIISNLTFLNPPAWDIHPVYCSNVRIHNITARAPIDSPYTSGIVPDSSENICIENSNISSGHDAIVLKSGWDEYGMSYGKATSRVHIRSVRLQSSSGAGLAFGSEMSGGISNVIAEHFLVLDSYVGIKVKTTKGRGGYVRDILVSDARLQNIYLGFSIDAFYGSHPDEDYDRSALPVVGGITYNDAVGGNITVAGNFSGLVDSPFQSICLSNVTFLISSESSSPSWVCSNVKGFSEEVLPEPCPDLQSSSSSSSCFASSTYPSTCVSSL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2092 454 Gene3D - 31 422 IPR012334 -
Lele13g2092 454 SMART pbh1 267 289 IPR006626 -
Lele13g2092 454 SMART pbh1 233 254 IPR006626 -
Lele13g2092 454 SMART pbh1 206 232 IPR006626 -
Lele13g2092 454 SMART pbh1 295 316 IPR006626 -
Lele13g2092 454 SMART pbh1 324 345 IPR006626 -
Lele13g2092 454 PANTHER PECTIN LYASE-RELATED 16 446 - -
Lele13g2092 454 SUPERFAMILY Pectin lyase-like 32 432 IPR011050 -
Lele13g2092 454 Pfam Pectate lyase superfamily protein 42 123 IPR024535 -
Lele13g2092 454 MobiDBLite consensus disorder prediction 432 454 - -
Lele13g2092 454 Pfam Glycosyl hydrolases family 28 129 417 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2092 Lele-ChrLele13 27858213 27859921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2092 26 442 Glycoside Hydrolase AT3G16850 59.857 0.0 517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0189 06 1162735 1164183 Lele13g2092 13 27858213 27859921 CCT
Lele07g0390 07 2212741 2215234 Lele13g2092 13 27858213 27859921 CCT
Lele08g0196 08 1204517 1205804 Lele13g2092 13 27858213 27859921 CCT
Lele13g2092 13 27858213 27859921 Lele15g0318 15 1793111 1794819 hybridization
Lele13g2092 13 27858213 27859921 Lele16g0329 16 1845143 1847002 hybridization