Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0329 ATGAAGGGCAGAGGCATTATTGTGGCCGTGCTTCTTCTGGCATTAAGCACTGCTGTAGAGAGCATTAATGGCGGACCATGCGAGCAGAGAGTATTGGACGCGAGGCCTCACAGTGTATCAATTTTAGAGTTTGGGGCAGTAGGAGATGGGAAAAAACTAAACACTGTCGCCTTTCAAAATGCAATATTCTATCTCAAATCCTTTGCTGATAAAGGCGGTGCACAGTTATATGTTCCCTCAGGCACATGGCTCACCGGAAGCCTCAACCTTACCAGCCACCTCACTCTCTTCCTTGCTCGCGGCGCCACCATTGTTGCATCCCAGGATATTGGGCACTGGAGTGTGGTGGATCCGCTGCCTTCTTATGGTGGCGTTGTGGGAAAGAGATATCGGAGCTTAATTTACGGACAGAATTTGAGCGACGTGGTAATTACAGGTGATAATGGGACTATTGATGGCCAGGGTGGTCTTTGGTGGGACATGTTCAGTTCTCATTCCTTGAATTACAGCCGACCACATCTCGTGGAATTCATAGGTTCTGATGACATCATCATCTCAAATTTAACGTTTTTAAATCCTCCAGCCTGGGACATCCATCCGGTGTATTGCAGCAACGTTCGGATTCACAATATTACAGCTCATGCACCGATTGATTCCCCTTACACCAGTGGTATAGTTCCAGATTCTTCAGAGAACATTTGCATTGAGAACAGCAATATAAGCAGTGGTCATGACGCAATTGTGCTGAAGAGTGGTTGGGATGAGTATGGAATGTCATATAGCAAAGCGACGTCGAGCGTGCACATAAGGAGTGTTAGGCTACAATCTTCGTCAGGTGCTGGCTTGGCTTTTGGAAGCGAGATGTCTGGAGGCATATCCAACGTAATTGCGGAGCACTTCCTCGTATTGAATTCCTATGTCGGCATCAAAGTGAAGACAACAAAGGGTAGGGGTGGCTATGTCAGAGACATTCTCGTCTCAGAGGGACAATTGCAAAATATCTATTTAGGATTCAGCATCGATGCGTTCTATGGTTCTCATCCAGATAAGGACTACGATAAAAGTGCACTTCCGGCTGTGGGTGGCATTACTTATAATGACGTGGTTGGTTCGAATATTACTGTTGCTGGCAATTTCTCGGGATTAGTTGATTCGCCATTCACATCAATCTGTCTTTCAAACGTGACTTTTTCAATCAGTTCCGAGTCATCATCATCTTCTTCATGGGTTTGCTCTAATGTGAAAGGTTTCTCGGAAGAGGTAGTTCCTAAGCCTTGTCCTGATCTCCAGAGCTCTTCTTCCTCGTCTTCTTGCTTTGCCTCCGCATATCCATCAACGTACGTCTCGAGCTTATGA 1356 0.4602 MKGRGIIVAVLLLALSTAVESINGGPCEQRVLDARPHSVSILEFGAVGDGKKLNTVAFQNAIFYLKSFADKGGAQLYVPSGTWLTGSLNLTSHLTLFLARGATIVASQDIGHWSVVDPLPSYGGVVGKRYRSLIYGQNLSDVVITGDNGTIDGQGGLWWDMFSSHSLNYSRPHLVEFIGSDDIIISNLTFLNPPAWDIHPVYCSNVRIHNITAHAPIDSPYTSGIVPDSSENICIENSNISSGHDAIVLKSGWDEYGMSYSKATSSVHIRSVRLQSSSGAGLAFGSEMSGGISNVIAEHFLVLNSYVGIKVKTTKGRGGYVRDILVSEGQLQNIYLGFSIDAFYGSHPDKDYDKSALPAVGGITYNDVVGSNITVAGNFSGLVDSPFTSICLSNVTFSISSESSSSSSWVCSNVKGFSEEVVPKPCPDLQSSSSSSSCFASAYPSTYVSSL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0329 451 MobiDBLite consensus disorder prediction 430 451 - -
Lele16g0329 451 PANTHER PECTIN LYASE-RELATED 12 446 - -
Lele16g0329 451 SUPERFAMILY Pectin lyase-like 26 437 IPR011050 -
Lele16g0329 451 Pfam Glycosyl hydrolases family 28 75 415 IPR000743 GO:0004650|GO:0005975
Lele16g0329 451 Gene3D - 28 422 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0329 Lele-ChrLele16 1845143 1847002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0329 7 440 Glycoside Hydrolase AT3G16850 57.273 0.0 511
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0189 06 1162735 1164183 Lele16g0329 16 1845143 1847002 CCT
Lele07g0390 07 2212741 2215234 Lele16g0329 16 1845143 1847002 CCT
Lele08g0196 08 1204517 1205804 Lele16g0329 16 1845143 1847002 CCT
Lele13g2092 13 27858213 27859921 Lele16g0329 16 1845143 1847002 hybridization