Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g0390 ATGGAGTCGTGCGATTGCGTTGAGCCAAAGAATTGGCCCCTAGATGAAATTATCGCGAAATGTCAGTACATGTCGGATATTCTAATAGCGCTTTCATATTTCACGATTCCTTTGGAACTGGTTTATTTTGTTCGGAAGACTGCAATCTTCCCATATAGATGGGTTCTTATCCAGTTCGGTGCTTTCATTATTTTTTGTGGAACATCTCACTTCTCAAGCCTCTGGACATTCTTCATGCACTCTAAGCGTATTGCTGTGTTCATGGCAATATCCAAAGCCTTGTGTGCTTTTGTATCCTGCTCCACTGCACTCATGCTCGTTCACATCATCCCTGATCTCATGAGCGTCAAAACTCGCGAGCGTCTTCTCAAGAACAAGGCTGAAGAACTTGACAGAGAAATGGGGCTTATTCTCAGTCAAGAAGAAACTGGGAGGAATGTCAGAATGTTGACTCGGGAGATCAGAAGCACACTTGATAGGCATACCATTCTCAAAACTACTCTTGTTGAGCTGGGTAGAACTTTGGGCTTGGAAGAATGTGCACTGTGGATGCCCTCAAGATGTGGTCAGCATCTTCAACTTTCACAAACATTAAGTGGTGCACAAGTCGGGTCGGGTATCCCAACAAATCTTCCCGTTGTTAATGAAGTTTTCAGTAGTCCTCGAGCGATGAGAATTCTACATACGTGTCCCTTGGTCACTATTAAACCTCTTGTTGGAAGATACATGCCACCTGAAGTGGTTGCTGTGAGAGTGCCTCTTTTGTATCTCTCAGATTTTCCAATTAATAATTGGCCAGATCTTTCTGCAAAGAGATATGCCATCATGGTCTTGATCCTTCCACCTGACAGTGCTAGAAAGTGGCGAGATTATGAATTGGAACTTGTCGATGTAGTAGCAGATCAGGTGGCAGTGGCTCTTTCACATGCTGCTATATTGGAGGAGTCTATGAGAGCGCGGGATGAACTCATGGAACAGAATGTTCATTTGGATTTGGCACGACGAGAAGCGGAGGAGGCAGTCCATGCTCGGAGTGATTTCCTTGCCGTCATGAATCATGAGATGAGGACACCAATAAACGCTATTATGGCATTGTCGTCACTTCTCTTGGAGACTGAACTGATTCCTGAGCAGAGGATTGCGATAGAGACAACATTGAAGAACAGCAACATGTTGGCAACACTTATTAGCGATGTTATAGATCTTTCTAGGCTAGCAGAGGGTAGCCTTCCATTAGAATTGGGAAAATTTAACCTTCATGAGGCTCTGACAGAGGTTATTAAGTTGATAAAGCCTATAGCATTAGTGAAGAAGTTAGTTGTGGCTTTAACCCTGGACCCCGATCTGCCCATCTTAGCAATTGGAGACGAGAAACGTCTAATGCAAACTCTTTTAAACGTCGTGAGTAATGCTGTGAAATTCACTAGGCAGGGTTATGTTTCTGTGAGAGCATCTGTTGCAAAACCAAAAGTTTTACAGGATTGGCGCACTCCAGAATTTCATCCCCCATCAAGTGATGGCCATCACTACATTATAATACAGGTTAAGGATTCAGGATGTGGCATTTCCCCCCAAGATATTCCTCATATTTTTACCAAATTTGCTGAGTCTCAAAGAGGACCAAGCAGAGGTGCAGGGCTCGGACTAGCCATCTGTAAAAGATTCGTGAAACTGATGGAAGGTGAAATGTGGATTGAGAGTGAAGGCATAGGGAAAGGGACTACGAATACATTTATAGTGAAGCTTGGAATTTGTGGGAATGCGGTTGCATCAGGGCACCCGGCTGCATATGGTGGAAGTGTACACCTCACTGGTTACAACGATGAGCTCTCTTTTTCCAATAGACTCAATCATATGAGCCTTCAGAACCAAGAATAG 1878 0.4388 MESCDCVEPKNWPLDEIIAKCQYMSDILIALSYFTIPLELVYFVRKTAIFPYRWVLIQFGAFIIFCGTSHFSSLWTFFMHSKRIAVFMAISKALCAFVSCSTALMLVHIIPDLMSVKTRERLLKNKAEELDREMGLILSQEETGRNVRMLTREIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRCGQHLQLSQTLSGAQVGSGIPTNLPVVNEVFSSPRAMRILHTCPLVTIKPLVGRYMPPEVVAVRVPLLYLSDFPINNWPDLSAKRYAIMVLILPPDSARKWRDYELELVDVVADQVAVALSHAAILEESMRARDELMEQNVHLDLARREAEEAVHARSDFLAVMNHEMRTPINAIMALSSLLLETELIPEQRIAIETTLKNSNMLATLISDVIDLSRLAEGSLPLELGKFNLHEALTEVIKLIKPIALVKKLVVALTLDPDLPILAIGDEKRLMQTLLNVVSNAVKFTRQGYVSVRASVAKPKVLQDWRTPEFHPPSSDGHHYIIIQVKDSGCGISPQDIPHIFTKFAESQRGPSRGAGLGLAICKRFVKLMEGEMWIESEGIGKGTTNTFIVKLGICGNAVASGHPAAYGGSVHLTGYNDELSFSNRLNHMSLQNQE 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g0390 625 Gene3D - 309 406 - -
Lele07g0390 625 ProSiteProfiles Histidine kinase domain profile. 350 584 IPR005467 -
Lele07g0390 625 Coils Coil 320 340 - -
Lele07g0390 625 PRINTS Bacterial sensor protein C-terminal signature 543 561 IPR004358 GO:0016310|GO:0016772
Lele07g0390 625 PRINTS Bacterial sensor protein C-terminal signature 529 539 IPR004358 GO:0016310|GO:0016772
Lele07g0390 625 PRINTS Bacterial sensor protein C-terminal signature 511 525 IPR004358 GO:0016310|GO:0016772
Lele07g0390 625 CDD HisKA 343 404 IPR003661 GO:0000155|GO:0007165
Lele07g0390 625 FunFam Ethylene response sensor 137 308 - -
Lele07g0390 625 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 329 408 IPR036097 GO:0000155|GO:0007165
Lele07g0390 625 Pfam His Kinase A (phospho-acceptor) domain 343 408 IPR003661 GO:0000155|GO:0007165
Lele07g0390 625 FunFam Ethylene receptor 1 408 587 - -
Lele07g0390 625 SUPERFAMILY GAF domain-like 159 319 - -
Lele07g0390 625 Gene3D - 407 587 IPR036890 -
Lele07g0390 625 SMART gaf_1 159 317 IPR003018 GO:0005515
Lele07g0390 625 Pfam GAF domain 159 307 IPR003018 GO:0005515
Lele07g0390 625 SMART HKATPase_4 455 584 IPR003594 -
Lele07g0390 625 FunFam Ethylene receptor 1 310 406 - -
Lele07g0390 625 Coils Coil 113 133 - -
Lele07g0390 625 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 587 - -
Lele07g0390 625 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 582 IPR003594 -
Lele07g0390 625 SMART HisKA_10 343 408 IPR003661 GO:0000155|GO:0007165
Lele07g0390 625 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 398 582 IPR036890 -
Lele07g0390 625 Gene3D - 139 308 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g0390 Lele-ChrLele07 2212741 2215234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g0390 1 603 Miscellaneous Gene Families AT2G40940 67.051 0.0 800
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g0390 07 2212741 2215234 Lele13g2092 13 27858213 27859921 CCT
Lele07g0390 07 2212741 2215234 Lele15g0318 15 1793111 1794819 CCT
Lele07g0390 07 2212741 2215234 Lele16g0329 16 1845143 1847002 CCT
Lele07g0390 07 2212741 2215234 Lele07g0390 07 2212741 2215234 ECH
Lele05g0372 05 2136344 2138718 Lele07g0390 07 2212741 2215234 hybridization
Lele06g0189 06 1162735 1164183 Lele07g0390 07 2212741 2215234 hybridization