Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0196 ATGAAAACAGGTGCTGTAGCTCTTTCACATGCCGCTATATTGGAGGAATCTATGAGAGCCCGGGATGAACTCATGAAACAGAATGTTCATTTGGATTTGGCACGACGAGAGGCAGAAGTGGCGGTCCATGGTCGGAATGATTTCATTGCCGTCATGAATCATGAGTTGAGGACACCAATGCACGCTCTTATGGCATTGTCGTCTCTTCTCTTGGAGACTGAACTGACTCCTGAGCAGAGGATTGTAATAGAGAAGACATTGAAGAACAGCAACATGTTGGCAACACTTATTAGCGATGTTATAGATCTTTCTAGCCTAGAAGACGGTAGCCTTCCATTAGAATTGGGAAAATTTAACCTTCATGGGGTTGTTGCAGAGGTCATTGAGTTGATAAAGCCTATAGCATCAGTGAAGAAGTTAGTTGTGACTTTAACTCTGGACATGGATCTGCCTATCTTTGCCATTGGAGACGAGAAACGTCTAATGCAAACTCTTTTAAACGTTAAGGATTCAGTATGTGGCATTTCCCCACAAGATATCCCTCGTATTTTTACCAAATTTGCTGAGCTTCAAAGAGGACCGAGCAGTGGTGCAGGGCTTGGACTAGCCATTTGTAGAAGATTCGTGAAACTGATGGAAGGTCACATGTGGATTGAGAATGAAGACATAGGGAAAGAGGCTCCCAATACATATATAGTGAAGCTTGGAATTTGTGGGAATGCTGCTGCATATCGTGGTAGTGGACACCTCACCAGCTACAAAGATGAGCTATTTTCCCAATAG 783 0.4342 MKTGAVALSHAAILEESMRARDELMKQNVHLDLARREAEVAVHGRNDFIAVMNHELRTPMHALMALSSLLLETELTPEQRIVIEKTLKNSNMLATLISDVIDLSSLEDGSLPLELGKFNLHGVVAEVIELIKPIASVKKLVVTLTLDMDLPIFAIGDEKRLMQTLLNVKDSVCGISPQDIPRIFTKFAELQRGPSSGAGLGLAICRRFVKLMEGHMWIENEDIGKEAPNTYIVKLGICGNAAAYRGSGHLTSYKDELFSQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0196 260 ProSiteProfiles Histidine kinase domain profile. 51 221 IPR005467 -
Lele08g0196 260 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 167 243 - -
Lele08g0196 260 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 30 110 IPR036097 GO:0000155|GO:0007165
Lele08g0196 260 FunFam Ethylene receptor 1 11 107 - -
Lele08g0196 260 Gene3D - 7 108 - -
Lele08g0196 260 Gene3D - 167 237 IPR036890 -
Lele08g0196 260 Gene3D - 109 166 IPR036890 -
Lele08g0196 260 SMART HisKA_10 44 109 IPR003661 GO:0000155|GO:0007165
Lele08g0196 260 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 99 221 IPR036890 -
Lele08g0196 260 Pfam His Kinase A (phospho-acceptor) domain 45 109 IPR003661 GO:0000155|GO:0007165
Lele08g0196 260 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 158 222 IPR003594 -
Lele08g0196 260 CDD HisKA 45 104 IPR003661 GO:0000155|GO:0007165
Lele08g0196 260 PRINTS Bacterial sensor protein C-terminal signature 164 178 IPR004358 GO:0016310|GO:0016772
Lele08g0196 260 PRINTS Bacterial sensor protein C-terminal signature 196 214 IPR004358 GO:0016310|GO:0016772
Lele08g0196 260 PRINTS Bacterial sensor protein C-terminal signature 182 192 IPR004358 GO:0016310|GO:0016772
Lele08g0196 260 SMART HKATPase_4 115 239 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0196 Lele-ChrLele08 1204517 1205804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0196 5 248 Miscellaneous Gene Families AT1G66340 57.045 1.18e-99 305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0196 08 1204517 1205804 Lele13g2092 13 27858213 27859921 CCT
Lele08g0196 08 1204517 1205804 Lele15g0318 15 1793111 1794819 CCT
Lele08g0196 08 1204517 1205804 Lele16g0329 16 1845143 1847002 CCT
Lele08g0196 08 1204517 1205804 Lele08g0196 08 1204517 1205804 ECH
Lele05g0372 05 2136344 2138718 Lele08g0196 08 1204517 1205804 hybridization
Lele06g0189 06 1162735 1164183 Lele08g0196 08 1204517 1205804 hybridization