Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0318 ATGGACTTTAAGTATTCTCCTCTGTTACAGGTGGCTGTGCTTCTTCTGGCATTAAGCACTGCTGTAGAGAGTATTAATGGCGGACCATGCGAGCAGAGAATATTGGATGCGAGGCCTCACAGTGTCTCAATTCTGGAGTTTGGGGCAGTAGGAGATGGGAAAAAGCTCAACACGATCGCCTTCCAAAATGCAATATTCTATCTCAAGTCCTTTGCTGATAAAGGCGGTGCACAGTTATATGTTCCCTCAGGAACATGGCTCACCGGAAGCTTCAACCTTACCAGCCACCTCACCCTCTTCCTTGCTCGTGGTGCCACCATTGTTGCATCCCAGGATATTGAGCACTGGAGTGTGGTGGATCCCCTGCCTTCTTATGGTGGAGTTCTGGGAAAGAGATATCGCAGCTTAATTTACGGACAGAACTTGAGCGACGTGGTGATTACAGGTGATAATGGGACTATTGATGGCCAGGGTGCTCTCTGGTGGGACATGTTCTATTCTCATTCCTTGAATTACAGCCGACCACATCTCGTGGAATTCATAGGTTCTGACGACATCATTATCTCGAATTTAACATTTTTAAATCCTCCTGCCTGGGACATCCATCCAGTGTATTGCAGCAACGTTCGGATTCACAACATTACAGCTCGTGCACCCATTGATTCCCCTTACACCAGTGGTATAGTTCCAGATTCTTCAGAGAACATATGCATTGAGAACAGCAACATTAGCAGTGGCCATGATGCGATTGTGCTGAAGAGTGGTTGGGATGAGTATGGAATGTCGTATGGCAAAGCGACGTCGAGAGTGCACATAAGGAGTGTGAGGCTACAATCGTCATCAGGTGCTGGCTTGGCTTTTGGAAGCGAGATGTCTGGAGGCATAACCAACGTAATTGCGGAGCACTTCCTCGTACTCGATTCCTATGTCGGCATCAAAGTGAAGACAACAAAGGGTAGGGGTGGCTATATCAGAGACATTCTCGTCTCAGACGCACGATTGCAAAATATCTATCTAGGATTCAGCATCGATGCGTTCTACGGTTCTCATCCAGATGAGGACTACGATCGGAGTGCGCTTCCTGTTGTTGGTGGCATTTCTTATAATGACGCGGTTGGTGGGAATATTACTGTTGCTGGCAATTTCTCGGGCTTAGTTGATTCGCCATTCCAATCAATCTGTCTTTCAAATGTGACTTTTTCAATCAGTTCCGAGTCATCATCTCCTTCATGGGTTTGCTCCAGCGTCAAAGGTTTCTCTGAAGAGGTAGTTCCTGAGCCTTGTCCTGATCTCCAGAGCTCTTCTTCCTCCTCCTCTTGCTTTGCCTCCTCCACATGTCCGTCAACTTGCGTCTCGCGCTTATGA 1365 0.474 MDFKYSPLLQVAVLLLALSTAVESINGGPCEQRILDARPHSVSILEFGAVGDGKKLNTIAFQNAIFYLKSFADKGGAQLYVPSGTWLTGSFNLTSHLTLFLARGATIVASQDIEHWSVVDPLPSYGGVLGKRYRSLIYGQNLSDVVITGDNGTIDGQGALWWDMFYSHSLNYSRPHLVEFIGSDDIIISNLTFLNPPAWDIHPVYCSNVRIHNITARAPIDSPYTSGIVPDSSENICIENSNISSGHDAIVLKSGWDEYGMSYGKATSRVHIRSVRLQSSSGAGLAFGSEMSGGITNVIAEHFLVLDSYVGIKVKTTKGRGGYIRDILVSDARLQNIYLGFSIDAFYGSHPDEDYDRSALPVVGGISYNDAVGGNITVAGNFSGLVDSPFQSICLSNVTFSISSESSSPSWVCSSVKGFSEEVVPEPCPDLQSSSSSSSCFASSTCPSTCVSRL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0318 454 Pfam Pectate lyase superfamily protein 42 123 IPR024535 -
Lele15g0318 454 PANTHER PECTIN LYASE-RELATED 17 442 - -
Lele15g0318 454 Pfam Glycosyl hydrolases family 28 129 401 IPR000743 GO:0004650|GO:0005975
Lele15g0318 454 Gene3D - 31 420 IPR012334 -
Lele15g0318 454 SUPERFAMILY Pectin lyase-like 29 432 IPR011050 -
Lele15g0318 454 SMART pbh1 267 289 IPR006626 -
Lele15g0318 454 SMART pbh1 233 254 IPR006626 -
Lele15g0318 454 SMART pbh1 206 232 IPR006626 -
Lele15g0318 454 SMART pbh1 319 341 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0318 Lele-ChrLele15 1793111 1794819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0318 26 442 Glycoside Hydrolase AT3G16850 60.095 0.0 516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0189 06 1162735 1164183 Lele15g0318 15 1793111 1794819 CCT
Lele07g0390 07 2212741 2215234 Lele15g0318 15 1793111 1794819 CCT
Lele08g0196 08 1204517 1205804 Lele15g0318 15 1793111 1794819 CCT
Lele13g2092 13 27858213 27859921 Lele15g0318 15 1793111 1794819 hybridization