Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0052 ATGTCTTCCTCCTTCTCTGCTACCCAGCACTTGAGTGCTTCGCTCTCCGCCCCTCTCCCGCGTCGCCGCTACAATTCCCCTCGACCCTCATCCCTCAAATGCCATCTCTCTTCCTCCAACGTCTCCGATTCCTCCAATAACCCCGCCCTCTTTAAAACCCTCTCCAAGACCGTTGCTCTCTCTTCCGCCGCCGCCCTCCTCCTCAACTCCACCCGCCTCCCGGCCCTCCTCTCCTTTGGATCCGGAGATTTCGGCGGCGGCGGCGGTAATGGCCTAGGTGGTGGCGGAGGCGGAGGGAACTGGTTCGGCGGCCCAGGTGGAGATGGAAATGGAGGGTTCTTCTCTAGACTTTTCTCCCCGGCAGATGCTATTGCCGATGAATCTCCTTCTCAGGAGTGGGATTCCCATGGGCTGCCGGCCAACATTGTTGTTCAACTCAATAAGCTCAGTGGATTTAAGAAATATAAAATTTCCGAGATTCTATTTTTCGATCGGAGGAGATGGAAAACGGTGGGCACCGAAGATTCCTTCTTCGAGATGGTTTCTCTGCGTCCCGGCGGTACATACACCAAGGCCCAGCTTCAGAAGGAGCTTGAGACTCTAGCTACCTGCGGAATGTTCGAGAAGGTAGATATGGAAGGCAAAACCAACCCAGATGGAACCATCGGAATTACTATATCTTTCACTGAGAGCACGTGGCAATCAGCCGATCGTTTCCGCTGCATCAATGTGGGATTGATGCCACAGTCGAAGCCCATTGAGATGGACGCGGATATGACTGATAAGGAGAAGCTGGAGTACTTTAGAAGTCAGGAGGAGGACTACAAGAGGAGAATTCAGAGGGCGAGGGCGTGTCTTCTGCCAATGCCCGTGCACATGGAGATTATGCAGATGCTGAAGGAGCAAGGAAAGGTGAGTGCGAGGCTGTTGCAGAAGATAAGGGATCGAGTCCAGAAGTGGTATCAGGATGAAGGCTTTGCATGCGCACAGGTGGTTAATTTCGGGAACCTGAACACCAAGGAGGTCGTCTGTGAGGTTGTAGAAGGGGATATCACCCAATTGGCCATTCAATTCCAGGATAAGCTTGGCAATGTGGTTGAAGGTAACACTGATGTTGCTGTGGTAGAAAGAGAACTGCCAAAACAGCTTCGCCCAGGTTACATTTTCAACATTGAGGCAGGGAAGCAAGCTTTAAGGAACGTTAACTCCCTTGCTTTGTTTTCAAACATTGAAGTGAATCCACGGCCTGATGAGAAGAATGAGGGAGGCATTATTGTTGAAATCAAGCTTAAAGAATTAGAACAGAAGACAGCAGAAGTCAGTACGGAATGGAGTATTGTCCCGGGGCGAGGAGGACGTCCTACATTGGCTTCACTGCAGCCAGGAGGAACTGTTACTTTTGAACATCGGAATTTGCAAGGATTGAATAGATCTCTTATTGGTTCGGTGACAACTAGCAACTTCCTCAATCCTCAGGATGATCTAGCATTTAAGCTTGAGTATGTGCATCCTTACTTGGATGGTGTATACAATCCAAATAACCGTACTTTTCGGGTAAGCTGCTTCAACGGTCGAAAGTTGAGTCCAGTATTCACTGGAGGGCCAGGGGTTGATGAAGTACCCCCAATATGGGTTGATCGTGCTGGTGTCAAAGCCAATATCACTGAGAATTTCACACGTCAGAGTAAATTTACTTATGGACTTGTGATGGAAGAGATAACGACACGTGATGAAAGTAGTCATGTCTGTTCAAATGGTCAACGAGTATTGCCTAGTGGAGGAATTAGTGCCGATGGACCTCCAACCACCATCAGTGGCACTGGCATTGATCGGATGGCATTTTTACAGGCCAATATTACACGTGATAACACAAAATTTGTGAATGGAGCTATCGTTGGAGACCGAAATGTGTTCCAGGTGGATCAAGGCCTTGGGATTGGCAGCAATTTCCCATTCTTTAATCGTCACCAGCTAACTGTGACACGATTTATCCAGTTGATGTCAGTGGAGGAAGGTGCTGGCAAAGCACCACCACCAGTGCTCGTTCTCCATAGTCATTATGGTGGTTGTGTAGGTGATCTTCCTAGTTATGATGCTTTTACTCTTGGAGGACCCTATTCTGTGAGGGGTTACAACATGGGTGAGCTTGGCGCAGCCAGAAACATCCTTGAGGTTGCTGCCGAGTTACGGGTACCTATCAAAGGGACGCATGTGTATGCCTTTGCAGAACATGGAAATGATCTTTGGAGTTCGAAGAACGTGAAAGGGAATCCCACAGAAGTGTATAGGCGAATGGGATATGGATCGTCCTATGGAGTTGGTCTCAAGCTTGGTTTAGTTAGAGCAGAATACGCCGTTGATCATAACTCAGGAACCGGTGCATTATTCTTCCGTTTTGGGGAGAGATTTTGA 2412 0.4871 MSSSFSATQHLSASLSAPLPRRRYNSPRPSSLKCHLSSSNVSDSSNNPALFKTLSKTVALSSAAALLLNSTRLPALLSFGSGDFGGGGGNGLGGGGGGGNWFGGPGGDGNGGFFSRLFSPADAIADESPSQEWDSHGLPANIVVQLNKLSGFKKYKISEILFFDRRRWKTVGTEDSFFEMVSLRPGGTYTKAQLQKELETLATCGMFEKVDMEGKTNPDGTIGITISFTESTWQSADRFRCINVGLMPQSKPIEMDADMTDKEKLEYFRSQEEDYKRRIQRARACLLPMPVHMEIMQMLKEQGKVSARLLQKIRDRVQKWYQDEGFACAQVVNFGNLNTKEVVCEVVEGDITQLAIQFQDKLGNVVEGNTDVAVVERELPKQLRPGYIFNIEAGKQALRNVNSLALFSNIEVNPRPDEKNEGGIIVEIKLKELEQKTAEVSTEWSIVPGRGGRPTLASLQPGGTVTFEHRNLQGLNRSLIGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPNNRTFRVSCFNGRKLSPVFTGGPGVDEVPPIWVDRAGVKANITENFTRQSKFTYGLVMEEITTRDESSHVCSNGQRVLPSGGISADGPPTTISGTGIDRMAFLQANITRDNTKFVNGAIVGDRNVFQVDQGLGIGSNFPFFNRHQLTVTRFIQLMSVEEGAGKAPPPVLVLHSHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILEVAAELRVPIKGTHVYAFAEHGNDLWSSKNVKGNPTEVYRRMGYGSSYGVGLKLGLVRAEYAVDHNSGTGALFFRFGERF 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0052 803 MobiDBLite consensus disorder prediction 30 45 - -
Lele12g0052 803 MobiDBLite consensus disorder prediction 14 45 - -
Lele12g0052 803 FunFam Protein TOC75-3, chloroplastic isoform A 153 228 - -
Lele12g0052 803 FunFam Protein TOC75-3 chloroplastic 457 803 - -
Lele12g0052 803 TIGRFAM 3a0901s03IAP75: chloroplast envelope protein translocase, IAP75 family 82 803 IPR005689 GO:0006886|GO:0015450
Lele12g0052 803 FunFam Protein TOC75-3 chloroplastic 352 433 - -
Lele12g0052 803 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 457 803 - -
Lele12g0052 803 Gene3D membrane protein fhac 351 434 - -
Lele12g0052 803 Gene3D membrane protein fhac 153 228 - -
Lele12g0052 803 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 140 800 IPR039910 -
Lele12g0052 803 Pfam Omp85 superfamily domain 471 803 IPR000184 GO:0019867
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0052 Lele-ChrLele12 512419 516194 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0052 12 512419 516194 Lele29g0080 29 477770 478867 CCT
Lele12g0052 12 512419 516194 Lele30g1316 30 15524948 15526045 CCT
Lele12g0052 12 512419 516194 Lele31g1468 31 20068510 20069607 CCT
Lele09g1266 09 21431737 21435539 Lele12g0052 12 512419 516194 hybridization
Lele10g1240 10 23447729 23451494 Lele12g0052 12 512419 516194 hybridization